In silico mining and characterization of simple sequence repeats (SSRs) from Euphorbia esula expressed sequence tags (ESTs): A potential crop for biofuel

Plant Omics ◽

10.21475/poj.10.02.17.pne370 ◽

2017 ◽

Vol 10 (02) ◽

pp. 53-63 ◽

Author(s):

Surojit Sen ◽

◽

Budheswar Dehury ◽

Jagajjit Sahu ◽

Sunayana Rathi ◽

...

Keyword(s):

Simple Sequence Repeats ◽

Expressed Sequence Tags ◽

In Silico ◽

Euphorbia Esula ◽

Expressed Sequence ◽

Simple Sequence ◽

In Silico Mining

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In silico mining and characterization of simple sequence repeats from gilthead sea bream (Sparus aurata) expressed sequence tags (EST-SSRs); PCR amplification, polymorphism evaluation and multiplexing and cross-species assays

Marine Genomics ◽

10.1016/j.margen.2011.01.003 ◽

2011 ◽

Vol 4 (2) ◽

pp. 83-91 ◽

Author(s):

Emmanouella Vogiatzi ◽

Jacques Lagnel ◽

Victoria Pakaki ◽

Bruno Louro ◽

Adelino V.M. Canario ◽

...

Keyword(s):

Simple Sequence Repeats ◽

Expressed Sequence Tags ◽

In Silico ◽

Sparus Aurata ◽

Pcr Amplification ◽

Sea Bream ◽

Expressed Sequence ◽

Simple Sequence ◽

In Silico Mining

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Identification and characterization of expressed sequence tags-derived simple sequence repeats markers from robusta coffee variety 'CxR' (an interspecific hybrid of Coffea canephora x Coffea congensis)

Molecular Ecology Notes ◽

10.1111/j.1471-8286.2004.00839.x ◽

2005 ◽

Vol 5 (1) ◽

pp. 80-83 ◽

Author(s):

PRASANNA R. BHAT ◽

V. KRISHNAKUMAR ◽

PRASAD S. HENDRE ◽

P. RAJENDRAKUMAR ◽

RAJEEV K. VARSHNEY ◽

...

Keyword(s):

Simple Sequence Repeats ◽

Expressed Sequence Tags ◽

Interspecific Hybrid ◽

Coffea Canephora ◽

Robusta Coffee ◽

Identification And Characterization ◽

Expressed Sequence ◽

Simple Sequence

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Characterization of simple sequence repeats (SSRs) from Phlebotomus papatasi (Diptera: Psychodidae) expressed sequence tags (ESTs)

Parasites & Vectors ◽

10.1186/1756-3305-4-189 ◽

2011 ◽

Vol 4 (1) ◽

Author(s):

Omar Hamarsheh ◽

Ahmad Amro

Keyword(s):

Simple Sequence Repeats ◽

Expressed Sequence Tags ◽

Phlebotomus Papatasi ◽

Expressed Sequence ◽

Simple Sequence

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In silico identification of expressed sequence tags based simple sequence repeats (EST-SSRs) markers in Trifolium species

ScienceAsia ◽

10.2306/scienceasia1513-1874.2020.001 ◽

2020 ◽

Vol 46 (1) ◽

pp. 6

Author(s):

Siddra Ijaz ◽

Imran Ul Haq ◽

Bukhtawer Nasir

Keyword(s):

Simple Sequence Repeats ◽

Expressed Sequence Tags ◽

In Silico ◽

In Silico Identification ◽

Ssrs Markers ◽

Expressed Sequence ◽

Simple Sequence

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Data Mining for Simple Sequence Repeats in Oil Palm Expressed Sequence Tags

Nature Precedings ◽

10.1038/npre.2009.3581.1 ◽

2009 ◽

Author(s):

Aikkal Riju ◽

Vadivel Arunachalam

Keyword(s):

Data Mining ◽

Simple Sequence Repeats ◽

Oil Palm ◽

Expressed Sequence Tags ◽

Expressed Sequence ◽

Simple Sequence

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Development of expressed sequence tags-simple sequence repeats (EST-SSRs) for Musa and their applicability in authentication of a Musa breeding population

AFRICAN JOURNAL OF BIOTECHNOLOGY ◽

10.5897/ajb12.972 ◽

2012 ◽

Vol 11 (71) ◽

Author(s):

Edwige Gaby Nkouaya Mbanjo,

Keyword(s):

Simple Sequence Repeats ◽

Expressed Sequence Tags ◽

Breeding Population ◽

Expressed Sequence ◽

Simple Sequence

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Simple sequence repeats in zebra finch (Taeniopygia guttata) expressed sequence tags: a new resource for evolutionary genetic studies of passerines

BMC Genomics ◽

10.1186/1471-2164-8-52 ◽

2007 ◽

Vol 8 (1) ◽

Author(s):

Jon Slate ◽

Matthew C Hale ◽

Timothy R Birkhead

Keyword(s):

Zebra Finch ◽

Simple Sequence Repeats ◽

Expressed Sequence Tags ◽

Taeniopygia Guttata ◽

Genetic Studies ◽

Evolutionary Genetic ◽

Expressed Sequence ◽

Simple Sequence

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Large scale in-silico identification and characterization of simple sequence repeats (SSRs) from de novo assembled transcriptome of Catharanthus roseus (L.) G. Don

Plant Cell Reports ◽

10.1007/s00299-014-1569-8 ◽

2014 ◽

Vol 33 (6) ◽

pp. 905-918 ◽

Author(s):

Santosh Kumar ◽

Niraj Shah ◽

Vanika Garg ◽

Sabhyata Bhatia

Keyword(s):

Catharanthus Roseus ◽

Simple Sequence Repeats ◽

In Silico ◽

Large Scale ◽

De Novo ◽

In Silico Identification ◽

Identification And Characterization ◽

Simple Sequence

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In Silico Mining of Simple Sequence Repeats in Mitochondrial Genomes of Genus Orthotrichum

Journal of scientific research ◽

10.37398/jsr.2020.640225 ◽

2020 ◽

Vol 64 (02) ◽

pp. 179-182

Author(s):

Sonu Kumar ◽

Swati Kumari ◽

Asheesh Shanker

Keyword(s):

Simple Sequence Repeats ◽

In Silico ◽

Mitochondrial Genomes ◽

Simple Sequence ◽

In Silico Mining

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Short note: Development of Six EST-SSR Markers in Larch

Silvae Genetica ◽

10.1515/sg-2011-0022 ◽

2011 ◽

Vol 60 (1-6) ◽

pp. 161-163 ◽

Author(s):

X. Yang ◽

X. Sun ◽

S. Zhang

Keyword(s):

Ssr Markers ◽

Simple Sequence Repeats ◽

Expressed Sequence Tags ◽

Biological Applications ◽

Expressed Sequence ◽

Simple Sequence

Abstract Six simple sequence repeats (SSR) markers were developed from expressed sequence tags (ESTs) in the genus Larix. Based on evaluation with 49 L. kaempferi genotypes, the number of alleles per locus ranged from two to four, and the expected (He) and observed (Ho) heterozygosity values were 0.225−0.694 and 0.201−0.656, respectively. The inbreeding coffcient (FIS) for all loci were less than zero except that LAReSSR85 was 0.4383. All the six EST-SSR markers were transferable to L. gmelini, L. olgensis var Koreana, L. principisrupprechtii and L. olgensis. BlastX analysis showed that five of the EST-SSRs were homologous to known genes. The six EST-SSR markers developed here can be valuable for biological applications in Larix.

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