Combining Gel Retardation and Footprinting to Determine Protein-DNA Interactions of Specific and/or Less Stable Complexes

BIO-PROTOCOL ◽

10.21769/bioprotoc.3843 ◽

2020 ◽

Vol 10 (23) ◽

Author(s):

Meng-Lun Hsieh ◽

Alice Boulanger ◽

Leslie Knipling ◽

Deborah Hinton

Keyword(s):

Dna Interactions ◽

Gel Retardation ◽

Protein Dna Interactions

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[38] Use of gel retardation to analyze protein-DNA interactions upstream of CYPIA1 gene

Methods in Enzymology - Cytochrome P450 ◽

10.1016/0076-6879(91)06109-g ◽

1991 ◽

pp. 403-408 ◽

Author(s):

Emily S. Shen ◽

Cornelis J. Elferink ◽

James P. Whitlock

Keyword(s):

Dna Interactions ◽

Gel Retardation ◽

Protein Dna Interactions

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A tale of two measurements: protein-DNA interactions and gene expression in single cells.

10.33540/343 ◽

2020 ◽

Author(s):

◽

Corina Maria Markodimitraki

Keyword(s):

Gene Expression ◽

Single Cells ◽

Dna Interactions ◽

Protein Dna Interactions

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Identification of interface residues involved in protein-protein and protein-DNA interactions from sequence using machine learning approaches

10.31274/rtd-180813-2240 ◽

2005 ◽

Author(s):

Changhui Yan

Keyword(s):

Machine Learning ◽

Learning Approaches ◽

Dna Interactions ◽

Protein Dna Interactions ◽

Interface Residues

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Faculty Opinions recommendation of Genome-wide mapping of in vivo protein-DNA interactions.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1087772.553829 ◽

2008 ◽

Author(s):

Magdalena Zernicka-Goetz

Keyword(s):

Dna Interactions ◽

Genome Wide ◽

Protein Dna Interactions

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Faculty Opinions recommendation of Genome-wide mapping of in vivo protein-DNA interactions.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1087772.541949 ◽

2007 ◽

Author(s):

Ulf Pettersson

Keyword(s):

Dna Interactions ◽

Genome Wide ◽

Protein Dna Interactions

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Faculty Opinions recommendation of Genome-wide mapping of in vivo protein-DNA interactions.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1087772.540596 ◽

2007 ◽

Author(s):

Deyou Zheng

Keyword(s):

Dna Interactions ◽

Genome Wide ◽

Protein Dna Interactions

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Faculty Opinions recommendation of Genome-wide mapping of in vivo protein-DNA interactions.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1087772.540244 ◽

2007 ◽

Author(s):

John Jaenike

Keyword(s):

Dna Interactions ◽

Genome Wide ◽

Protein Dna Interactions

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Faculty Opinions recommendation of Global mapping of protein-DNA interactions in vivo by digital genomic footprinting.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1157755.618976 ◽

2009 ◽

Author(s):

Fyodor Urnov

Keyword(s):

Dna Interactions ◽

Protein Dna Interactions ◽

Global Mapping ◽

Genomic Footprinting

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Protocol for fractionation-assisted native ChIP (fanChIP) to capture protein-protein/DNA interactions on chromatin

STAR Protocols ◽

10.1016/j.xpro.2021.100404 ◽

2021 ◽

Vol 2 (2) ◽

pp. 100404

Author(s):

Ryo Miyamoto ◽

Akihiko Yokoyama

Keyword(s):

Dna Interactions ◽

Protein Dna Interactions

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Human major histocompatibility complex class II-associated invariant chain gene promoter. Functional analysis and in vivo protein/DNA interactions of constitutive and IFN-gamma-induced expression.

Journal of Biological Chemistry ◽

10.1016/s0021-9258(19)74318-x ◽

1993 ◽

Vol 268 (35) ◽

pp. 26328-26333

Author(s):

A M Brown ◽

K L Wright ◽

J P Ting

Keyword(s):

Gene Promoter ◽

Invariant Chain ◽

Complex Class ◽

Dna Interactions ◽

Human Major Histocompatibility Complex ◽

Ifn Gamma ◽

Histocompatibility Complex ◽

Protein Dna Interactions

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