scholarly journals Role of the Wilson-mass parameter in the overlap-Dirac topological charge density

2010 ◽  
Author(s):  
P. Moran ◽  
Derek Leinweber ◽  
J. Zhang
Polymers ◽  
2021 ◽  
Vol 13 (13) ◽  
pp. 2074
Author(s):  
Sara Tabandeh ◽  
Cristina Elisabeth Lemus ◽  
Lorraine Leon

Electrostatic interactions, and specifically π-interactions play a significant role in the liquid-liquid phase separation of proteins and formation of membraneless organelles/or biological condensates. Sequence patterning of peptides allows creating protein-like structures and controlling the chemistry and interactions of the mimetic molecules. A library of oppositely charged polypeptides was designed and synthesized to investigate the role of π-interactions on phase separation and secondary structures of polyelectrolyte complexes. Phenylalanine was chosen as the π-containing residue and was used together with lysine or glutamic acid in the design of positively or negatively charged sequences. The effect of charge density and also the substitution of fluorine on the phenylalanine ring, known to disrupt π-interactions, were investigated. Characterization analysis using MALDI-TOF mass spectroscopy, H NMR, and circular dichroism (CD) confirmed the molecular structure and chiral pattern of peptide sequences. Despite an alternating sequence of chirality previously shown to promote liquid-liquid phase separation, complexes appeared as solid precipitates, suggesting strong interactions between the sequence pairs. The secondary structures of sequence pairs showed the formation of hydrogen-bonded structures with a β-sheet signal in FTIR spectroscopy. The presence of fluorine decreased hydrogen bonding due to its inhibitory effect on π-interactions. π-interactions resulted in enhanced stability of complexes against salt, and higher critical salt concentrations for complexes with more π-containing amino acids. Furthermore, UV-vis spectroscopy showed that sequences containing π-interactions and increased charge density encapsulated a small charged molecule with π-bonds with high efficiency. These findings highlight the interplay between ionic, hydrophobic, hydrogen bonding, and π-interactions in polyelectrolyte complex formation and enhance our understanding of phase separation phenomena in protein-like structures.


2011 ◽  
Vol 11 (9) ◽  
pp. 4213-4219 ◽  
Author(s):  
Matthew D. Smith ◽  
Samuel M. Blau ◽  
Kelvin B. Chang ◽  
Matthias Zeller ◽  
Joshua Schrier ◽  
...  
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2005 ◽  
Vol 140 ◽  
pp. 626-628 ◽  
Author(s):  
C. Aubin ◽  
C. Bernard ◽  
Steven Gottlieb ◽  
E.B. Gregory ◽  
Urs M. Heller ◽  
...  

2018 ◽  
Vol 98 (1) ◽  
Author(s):  
You-Hao Zou ◽  
Jian-Bo Zhang ◽  
Guang-Yi Xiong

2019 ◽  
Vol 2019 (11) ◽  
Author(s):  
A. Gómez Nicola ◽  
J. Ruiz de Elvira ◽  
A. Vioque-Rodríguez

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