scholarly journals Center for Open Science: Response to ASAPbio RFA for a Preprint Service

2017 ◽  
Author(s):  
Brian A. Nosek ◽  
Melanie Benjamin ◽  
Sara D. Bowman ◽  
Michael Haselton ◽  
David M Litherland ◽  
...  
Keyword(s):  
Protein Data Bank ◽  
Health Research ◽  
Data Bank ◽  
Open Science ◽  
Community Based ◽  
Data Repositories ◽  
Central Service ◽  
Research Alliance

The Center for Open Science (COS) and technical partners propose to extend its open infrastructure to support ASAPbio's call for a central service. COS's approach is community based and is accompanied by letters of support from 12 preprint services (e.g., arXiv, bioRxiv, SocArXiv), 15 data repositories (e.g., Dryad, Protein Data Bank, figshare), and 5 other stakeholders (e.g., HHMI, Health Research Alliance, GBSI).

Addressing the Needs of Culturally Diverse Populations in Community-Based Health Research

2001 ◽  
Author(s):  
Renee Taylor ◽  
Gary Harper ◽  
Audrey Bangi ◽  
Radhika Chimata ◽  
Danielle Johnson
Keyword(s):  
Health Research ◽  
Culturally Diverse ◽  
Diverse Populations ◽  
Community Based ◽  
Culturally Diverse Populations

scholarly journals The Protein Data Bank: data distribution and query functionality

2002 ◽  
Vol 58 (s1) ◽  
pp. c214-c214
Author(s):  
W. F. Bluhm ◽  
T. Battistuz ◽  
E. Clingman ◽  
N. Deshpande ◽  
W. Fleri ◽  
...  
Keyword(s):  
Protein Data Bank ◽  
Data Distribution ◽  
Data Bank

FLIPPER: predicting and characterizing linear interacting peptides in the Protein Data Bank

2021 ◽  
pp. 166900
Author(s):  
Alexander Miguel Monzon ◽  
Paolo Bonato ◽  
Marco Necci ◽  
Silvio C.E. Tosatto ◽  
Damiano Piovesan
Keyword(s):  
Protein Data Bank ◽  
Data Bank

scholarly journals Validation and correction of Zn–Cys x His y complexes

2016 ◽  
Vol 72 (10) ◽  
pp. 1110-1118 ◽  
Author(s):  
Wouter G. Touw ◽  
Bart van Beusekom ◽  
Jochem M. G. Evers ◽  
Gert Vriend ◽  
Robbie P. Joosten
Keyword(s):  
Crystal Structures ◽  
Protein Data Bank ◽  
Model Validation ◽  
Data Bank ◽  
Zinc Complexes ◽  
Zinc Ions ◽  
Tetrahedral Complex ◽  
Context Sensitive

Many crystal structures in the Protein Data Bank contain zinc ions in a geometrically distorted tetrahedral complex with four Cys and/or His ligands. A method is presented to automatically validate and correct these zinc complexes. Analysis of the corrected zinc complexes shows that the average Zn–Cys distances and Cys–Zn–Cys angles are a function of the number of cysteines and histidines involved. The observed trends can be used to develop more context-sensitive targets for model validation and refinement.

scholarly journals Protein Data Bank: the single global archive for 3D macromolecular structure data

2018 ◽  
Vol 47 (D1) ◽  
pp. D520-D528 ◽  
Author(s):  
◽  
Stephen K Burley ◽  
Helen M Berman ◽  
Charmi Bhikadiya ◽  
Chunxiao Bi ◽  
...  
Keyword(s):  
Protein Data Bank ◽  
Structure Data ◽  
Data Bank ◽  
Macromolecular Structure
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