scholarly journals Newton, Laplace, and the Epistemology of Systems Biology

2012 ◽  
Vol 11 ◽  
pp. CIN.S10630
Author(s):  
Michael L. Bittner ◽  
Edward R. Dougherty

For science, theoretical or applied, to significantly advance, researchers must use the most appropriate mathematical methods. A century and a half elapsed between Newton's development of the calculus and Laplace's development of celestial mechanics. One cannot imagine the latter without the former. Today, more than three-quarters of a century has elapsed since the birth of stochastic systems theory. This article provides a perspective on the utilization of systems theory as the proper vehicle for the development of systems biology and its application to complex regulatory diseases such as cancer.

Author(s):  
Alia Benkahla ◽  
Lamia Guizani-Tabbane ◽  
Ines Abdeljaoued-Tej ◽  
Slimane Ben Miled ◽  
Koussay Dellagi

This chapter reports a variety of molecular biology informatics and mathematical methods that model the cell response to pathogens. The authors first outline the main steps of the immune response, then list the high throughput biotechnologies, generating a wealth of information on the infected cell and some of the immune-related databases; and finally explain how to extract meaningful information from these sources. The modelling aspect is divided into modelling molecular interaction and regulatory networks, through dynamic Boolean and Bayesian models, and modelling biochemical networks and regulatory networks, through Differential/Difference Equations. The interdisciplinary approach explains how to construct a model that mimics the cell’s dynamics and can predict the evolution and the outcome of infection.


2015 ◽  
Vol 2015 ◽  
pp. 1-3
Author(s):  
Antonio F. Bertachini A. Prado ◽  
Josep J. Masdemont ◽  
Maria Cecilia Zanardi ◽  
Silvia Maria Giuliatti Winter ◽  
Tadashi Yokoyama ◽  
...  

2016 ◽  
Vol 12 (2) ◽  
pp. e1004611 ◽  
Author(s):  
Rory M. Donovan ◽  
Jose-Juan Tapia ◽  
Devin P. Sullivan ◽  
James R. Faeder ◽  
Robert F. Murphy ◽  
...  

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