Parallelizing and Analyzing the Behavior of Sequence Alignment Algorithm on a Cluster of Workstations for Large Datasets

International Journal of Computer Applications ◽

10.5120/13042-0091 ◽

2013 ◽

Vol 74 (21) ◽

pp. 18-30 ◽

Author(s):

Sathe S.R ◽

Shrimankar D. D.

Keyword(s):

Sequence Alignment ◽

Large Datasets ◽

Alignment Algorithm ◽

Sequence Alignment Algorithm ◽

Cluster Of Workstations

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A performance evaluation of a local DNA sequence alignment algorithm on a cluster of workstations

18th International Parallel and Distributed Processing Symposium, 2004. Proceedings. ◽

10.1109/ipdps.2004.1303158 ◽

2004 ◽

Author(s):

A. Boukerche ◽

A.C.M.A. de Melo ◽

M.E.T. Walter ◽

R.C.F. Melo ◽

M.N.P. Santana ◽

...

Keyword(s):

Performance Evaluation ◽

Dna Sequence ◽

Sequence Alignment ◽

Alignment Algorithm ◽

Sequence Alignment Algorithm ◽

Dna Sequence Alignment ◽

Cluster Of Workstations ◽

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Fast DNA Sequence Alignment Algorithm Based on Quality Score Using Improved Dynamic Programming and Fuzzy Gap Cost Control

Current Bioinformatics ◽

10.2174/1574893609666140523000227 ◽

2014 ◽

Vol 9 (5) ◽

pp. 540-547

Author(s):

Kwang Kim ◽

Hyun Park ◽

Doo Song

Keyword(s):

Dynamic Programming ◽

Dna Sequence ◽

Sequence Alignment ◽

Cost Control ◽

Quality Score ◽

Alignment Algorithm ◽

Sequence Alignment Algorithm ◽

Dna Sequence Alignment ◽

Improved Dynamic Programming

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Measuring rank correlation coefficients between financial time series: A GARCH-copula based sequence alignment algorithm

European Journal of Operational Research ◽

10.1016/j.ejor.2013.07.028 ◽

2014 ◽

Vol 232 (2) ◽

pp. 375-382 ◽

Author(s):

Yih-Wenn Laih

Keyword(s):

Time Series ◽

Sequence Alignment ◽

Financial Time Series ◽

Rank Correlation ◽

Correlation Coefficients ◽

Alignment Algorithm ◽

Financial Time ◽

Sequence Alignment Algorithm

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Parallel Sequence Alignment Algorithm for Clustering System

IFIP International Federation for Information Processing - Knowledge Enterprise: Intelligent Strategies in Product Design, Manufacturing, and Management ◽

10.1007/0-387-34403-9_43 ◽

2006 ◽

pp. 311-321 ◽

Author(s):

Yang Chen ◽

Songnian Yu ◽

Ming Leng

Keyword(s):

Sequence Alignment ◽

Alignment Algorithm ◽

Sequence Alignment Algorithm

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MTRAP: Pairwise sequence alignment algorithm by a new measure based on transition probability between two consecutive pairs of residues

BMC Bioinformatics ◽

10.1186/1471-2105-11-235 ◽

2010 ◽

Vol 11 (1) ◽

Author(s):

Toshihide Hara ◽

Keiko Sato ◽

Masanori Ohya

Keyword(s):

Sequence Alignment ◽

Transition Probability ◽

Alignment Algorithm ◽

Pairwise Sequence Alignment ◽

Sequence Alignment Algorithm

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A novel two-tier multiple sequence alignment algorithm

2010 13th International Conference on Computer and Information Technology (ICCIT) ◽

10.1109/iccitechn.2010.5723819 ◽

2010 ◽

Author(s):

Md. Sowgat Ibne Mahmud ◽

Md. Akhter Hosen ◽

Md. Saroer-E-Azam ◽

M. A. Mottalib ◽

Hawlader Abdullah Al-Mamun

Keyword(s):

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Alignment Algorithm ◽

Multiple Sequence ◽

Sequence Alignment Algorithm

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MPSAGA: a matrix-based pair-wise sequence alignment algorithm for global alignment with position based sequence representation

Sadhana ◽

10.1007/s12046-019-1141-x ◽

2019 ◽

Vol 44 (7) ◽

Author(s):

Jyoti Lakhani ◽

Ajay Khunteta ◽

Anupama Choudhary ◽

Dharmesh Harwani

Keyword(s):

Sequence Alignment ◽

Global Alignment ◽

Alignment Algorithm ◽

Sequence Alignment Algorithm ◽

Sequence Representation

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Research and Implementation of Biological Sequence Alignment Algorithm

International Conference on Measurement and Control Engineering 2nd (ICMCE 2011) ◽

10.1115/1.859858.paper32 ◽

2011 ◽

pp. 221-228

Keyword(s):

Sequence Alignment ◽

Alignment Algorithm ◽

Biological Sequence ◽

Sequence Alignment Algorithm

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Sequence alignment of citrate synthase proteins using a multiple sequence alignment algorithm and multiple scoring matrices

Protein Engineering Design and Selection ◽

10.1093/protein/2.8.597 ◽

1989 ◽

Vol 2 (8) ◽

pp. 597-604 ◽

Author(s):

Christina M. Henneke ◽

Michael J. Danson ◽

David W. Hough ◽

David J. Osguthorpe

Keyword(s):

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Citrate Synthase ◽

Alignment Algorithm ◽

Multiple Sequence ◽

Sequence Alignment Algorithm ◽

Scoring Matrices

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An Efficient Sequence Alignment Algorithm on a LARPBS

Lecture Notes in Computer Science - Computational Science and Its Applications – ICCSA 2007 ◽

10.1007/978-3-540-74484-9_33 ◽

2007 ◽

pp. 379-387 ◽

Author(s):

David Semé ◽

Sidney Youlou

Keyword(s):

Sequence Alignment ◽

Alignment Algorithm ◽

Sequence Alignment Algorithm ◽

Efficient Sequence

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