scholarly journals MOLECULAR STRUCTURE AND VIBRATION SPECTRA OF PIVALIC ACID

2018 ◽  
Vol 59 (7) ◽  
pp. 17
Author(s):  
Alexander E. Pogonin ◽  
Oleg A. Pimenov ◽  
Yuriy A. Zhabanov
Keyword(s):  
Molecular Structure ◽  
Ir Spectra ◽  
Gas Phase ◽  
Metal Ion ◽  
Density Functional ◽  
Pivalic Acid ◽  
Basis Sets ◽  
Potential Energy Distribution ◽  
Central Metal ◽  
Vibrational Modes

The metal carboxylates such as metal pivalates (salts of the pivalic acid (CH3)3CCOOH) attract a great interest as most promising precursors for chemical vapor deposition (CVD) technology. The possibility to use these substances in the CVD technology is specified by their good thermal stability and high volatility. For modeling of chemical reactions with metal pivalates in the gas-phase and the data on molecular structure will be very useful, in particularly information about effect of central metal ion to geometry of pivalic ligands. In the frame of this task the structures of metal pivalate molecules and pivalic acid (H(piv)) in a gas phase should be finding. The aim of present work is theoretical investigation of the geometry and IR-spectrum of H(piv) using density functional theory (DFT) methods. All calculations were performed using the Gaussian 03 program. The optimization of geometry and quadratic force field calculations were carried out using DFT functionals B3LYP, PBE, PBE0 and BP86 with correlation-consistent triple-ζ valence cc-pVTZ basis sets for O, C, and H. Appropriate assignment of vibrational modes was carried out by the potential energy distribution (PED) analysis among internal coordinates using the SHRINK program. According to DFT computations, the H(piv) molecule has an equilibrium structure of Cs symmetry with Гvib=26A'+19A''. The theoretical and experimental IR-spectra are satisfactorily agreed. The comparison of the ten intensities of highest bands in spectra allowed determining linear correlation between peaks position in experimental and modeling IR-spectra. It should be note the complicated composition of vibrational modes.

Molecular structure and tautomers of [30]trithia-2,3,5,10,12,13,15,20,22,23,25,30-dodecaazahexaphyrin

2013 ◽  
Vol 17 (03) ◽  
pp. 220-228 ◽  
Author(s):  
Yuriy A. Zhabanov ◽  
Alexander V. Zakharov ◽  
Sergei A. Shlykov ◽  
Olga N. Trukhina ◽  
Elena A. Danilova ◽  
...  
Keyword(s):  
Molecular Structure ◽  
Density Functional Theory ◽  
Gas Phase ◽  
Density Functional ◽  
Density Functional Theory Calculations ◽  
Equilibrium Structure ◽  
Mass Spectrometric ◽  
Basis Sets ◽  
Functional Theory ◽  
Mass Spectrometric Experiment

The gas-phase molecular structure of the unsubstituted [30]trithia-2,3,5,10,12,13,15,20,22,23,25,30-dodecaazahexaphyrin (C30H15N15S3) has been studied by a synchronous gas electron diffraction and mass spectrometric experiment and density functional theory calculations using the B3LYP hybrid method and cc-pVTZ basis sets. The molecule has an equilibrium structure of D 3h symmetry with a planar macrocycle and the thiadiazole rings oriented in such a way that the sulfur atoms point outwards from the inner cavity. Tautomers of this compound have been studied by DFT computations.

scholarly journals Molecular Structure, vibrational spectra, Molecular Docking and ADMET Study of Cellulose Triacetate II-=SUP=-*-=/SUP=-

2020 ◽  
Vol 128 (8) ◽  
pp. 1128
Author(s):  
Sefa Celik ◽  
A. Demet Demirag ◽  
Aysen E. Ozel ◽  
Sevim Akyuz
Keyword(s):  
Molecular Structure ◽  
Molecular Docking ◽  
Aspergillus Niger ◽  
Density Functional ◽  
Cellulose Triacetate ◽  
Potential Energy Distribution ◽  
Cellulase Enzyme ◽  
Important Relationship ◽  
In Silico Admet ◽  
Nano Cluster

People have started to look for alternative sources because of the health problems created by petrochemical products used in all areas of human life and environmental problems that remain intact in nature for years. In this study, molecular structure analysis of cellulose triacetate II (CTA II) molecule, obtained from cellulose II and acetate, was carried out. There is an important relationship between the structure and activity of molecules, so it is very important to determine the geometric structure of a molecule. Therefore, using density functional theory (DFT) the most stable molecular geometries of the cellulose triacetate II monomer (C12H18O9) as well as dimer (C24H36O18), which included intermolecular H-bonding, were calculated. The analogous calculations were carried out for the (CTA-II)2 nano-cluster (C24H34O17), which represents the local structure of CTA-II crystal, and created by binding the two most stable CTA II molecules by covalent bond. Scaled wavenumbers and potential energy distribution of the vibrational modes of CTA monomer and (CTA-II)2 nano-cluster were computed. In order to evaluate the interaction of CTA II with the Aspergillus niger cellulase enzyme,which is an important that is active in cellulose digestion and CTA II, molecular docking studies were carried out. H-binding interactions between CTA II (in monomeric, dimeric and cluster forms) and the active site of the Aspergillus niger cellulase enzyme were shown. Moreover, in silico ADMET prediction study was calculated for CTA-II monomer to predict its druglikeness properties. Keywords: Cellulose triacetate II, Density Function Theory, IR-ATR, cluster for.

scholarly journals Structural, Electronic, and Vibrational Properties of Isoniazid and Its Derivative N-Cyclopentylidenepyridine-4-carbohydrazide: A Quantum Chemical Study

2014 ◽  
Vol 2014 ◽  
pp. 1-15 ◽  
Author(s):  
Anoop kumar Pandey ◽  
Abhishek Bajpai ◽  
Vikas Baboo ◽  
Apoorva Dwivedi
Keyword(s):  
Density Functional ◽  
Quantum Chemical Study ◽  
Chemical Study ◽  
Basis Sets ◽  
Ground State Structure ◽  
Vibrational Modes ◽  
Functional Theory ◽  
Complete Assignment ◽  
Experimental Values ◽  
Homo Lumo

Isoniazid (Laniazid, Nydrazid), also known as isonicotinylhydrazine (INH), is an organic compound that is the first-line medication in prevention and treatment of tuberculosis. The optimized geometry of the isoniazid and its derivative N-cyclopentylidenepyridine-4-carbohydrazide molecule has been determined by the method of density functional theory (DFT). For both geometry and total energy, it has been combined with B3LYP functionals having LANL2DZ and 6-311 G (d, p) as the basis sets. Using this optimized structure, we have calculated the infrared wavenumbers and compared them with the experimental data. The calculated wavenumbers by LANL2DZ are in an excellent agreement with the experimental values. On the basis of fully optimized ground-state structure, TDDFT//B3LYP/LANL2DZ calculations have been used to determine the low-lying excited states of isoniazid and its derivative. Based on these results, we have discussed the correlation between the vibrational modes and the crystalline structure of isoniazid and its derivative. A complete assignment is provided for the observed FTIR spectra. The molecular HOMO, LUMO composition, their respective energy gaps, and MESP contours/surfaces have also been drawn to explain the activity of isoniazid and its derivative.

scholarly journals Popular Integration Grids Can Result in Large Errors in DFT-Computed Free Energies

2019 ◽  
Author(s):  
Andrea N. Bootsma ◽  
Steven Wheeler
Keyword(s):  
Transition State ◽  
Molecular Orientation ◽  
Density Functional ◽  
Low Frequency ◽  
Basis Sets ◽  
Vibrational Modes ◽  
Free Energies ◽  
Functional Theory ◽  
Stereoselective Reactions ◽  
Transition State Structures

Density functional theory (DFT) has emerged as a powerful tool for analyzing (bio-)organic and organometallic systems and proved remarkably accurate in computing the small free energy differences that underpin many chemical phenomena (e.g. regio- and stereoselective reactions). We show that the lack of rotational invariance of popular DFT integration grids reveals large uncertainties in computed free energies for some isomerizations, torsional barriers, and regio- and stereoselective reactions. The result is that predictions based on DFT-computed free energies for systems with very low-frequency vibrational modes can change qualitatively depending on molecular orientation. For example, for a metal-free propargylation of benzaldehyde, predicted enantioselectivities based on B97-D/def2-TZVP free energies using a popular pruned (75,302) integration grid can vary from 62:38 to 99:1 by simply rotating the transition state structures. Relative free energies for the regiocontrolling transition state structures for an Ir-catalyzed C–H functionalization reaction computed using M06/6-31G(d,p)/LANL2DZ and the same grid can vary by more than 5 kcal/mol, resulting in predicted regioselectivities that range anywhere from 14:86 to >99:1. Errors of these magnitudes occur for different functionals and basis sets, are potentially widespread among modern applications of DFT, and can be reduced by using much denser integration grids than commonly employed.<br>

scholarly journals Investigation of the Effects of Solvents on the Structural, Electronic and Thermodynamic Properties of Rosiglitazone Based on Density Functional Theory

2019 ◽  
pp. 1-18
Author(s):  
R. A. Ismail ◽  
A. B. Suleiman ◽  
A. S. Gidado ◽  
A. Lawan ◽  
A. Musa
Keyword(s):  
Density Functional Theory ◽  
Dipole Moment ◽  
Thermodynamic Properties ◽  
Gas Phase ◽  
Density Functional ◽  
Dielectric Constants ◽  
Basis Sets ◽  
Lumo Energy ◽  
Functional Theory ◽  
Homo Lumo

Rosiglitazone ( C18H19N3O3S ) is an anti-diabetic drug that reduces insulin resistance in patients with type 2 diabetes. The parameters (bond lengths and bond angles), HOMO, LUMO, HOMO-LUMO energy gap, dipole moment, thermodynamic properties, total energy and vibrational frequencies and intensities of the Rosiglitazone molecule in gas phase and in solvents (Water, Ethanol, DMSO and Acetonitrile) were calculated based on Density Functional Theory (DFT) using standard basis sets: B3LYP/6-31G(d,p), B3LYP/6-31+G(d,p) and B3LYP/6-31++G(d,p). Windows version of Gaussian 09 was used for all the calculations. From the results obtained, the solvents have little influence on the optimized parameters of the molecule. The highest HOMO value of -5.433 eV was found in gas phase showing that the molecule will best donate electron in the gas phase, followed by ethanol in comparison with other solvents. The values of the HOMO were observed to increase with the decrease in dielectric constants of the solvents across all the basis sets used. The lowest LUMO energy of -1.448 eV was found to be in ethanol which shows that the molecule will best accept electron in ethanol compared to the gas phase and other solvents. The largest HOMO-LUMO gap of 4.285 eV was found in water which shows its higher kinetic stability and less chemical reactivity compared to other solvents and in the gas phase. The chemical softness of the molecule was found to decrease as the dielectric constants of the solvents increased namely from ethanol to water. The chemical hardness was found to slightly increase with the increase in dielectric constants of the solvents. The highest value of the dipole moment of 4.6874 D was found in water indicating that the molecule will have the strongest intermolecular interactions in water compared to other solvents and in the gas phase. The total energy increased as the dielectric constants of the solvents decreased from water to ethanol. The vibrational frequencies and intensities increased as the dielectric constants of the solvents increased from ethanol to water. The results confirmed the effects of solvents on the structural, electronic and thermodynamic properties of the studied molecule and will be useful in the design and development of rosiglitazone as an anti-diabetic drug.

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