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2020 ◽  
Vol 17 (9) ◽  
pp. 4468-4472
Author(s):  
Deepa Yogish ◽  
T. N. Manjunath ◽  
Ravindra S. Hegadi

In the world of internet, searching play a vital role to retrieve the relevant answers for the user specific queries. The most promising application of natural language processing and information retrieval system is Question answering system which provides directly the accurate answer instead of set of documents. The main objective of information retrieval is to retrieve relevant document from a huge volume of data sets underlying in the internet using appropriatemodel. There are many models proposed for retrieval process such as Boolean, Vector space and Probabilistic method. Vector space model is best method in information retrieval for document ranking with efficient document representation which combines simplicity and clarity. VSM adopts similarity function to measure the matching between documents and user intent, and assign scores from the biggest to smallest. The documents and query are assigned with weights using term frequency and inverse document frequency method. To retrieve most relevant document to the user query term, document ranking function cosine similarity score is applied for every document and user query. The documents having more similarity scores will be considered as relevant documents to the query term and they are ranked based on these scores. This paper emphasizes on different techniques of information retrieval and Vector Space Model offers a realistic compromise in IR processing. It allows best weighing scheme which ranks the set of documents in order of relevance based on user query.


With the rapid improvement in the field of social networks, a huge amount of small size texts are generated within a fraction of a second. Understanding and categorizing these texts for effective query processing is considered as one of the vital defy in the field of Natural Language Processing. The objective is to retrieve only relevant documents by categorizing the short texts. In the proposed method, terms are categorized by means of Latent Semantic Analysis (LSA). Our novel method focuses on applying the semantic enrichment for term categorization with the target of augmenting the unstructured data items for achieving faster and intelligent query processing in the big data environment. Therefore, retrieval of documents can be made effective with the flexibility of query term mapping


Author(s):  
Min Pan ◽  
Yue Zhang ◽  
Qiang Zhu ◽  
Bo Sun ◽  
Tingting He ◽  
...  

Abstract Background In order to better help doctors make decision in the clinical setting, research is necessary to connect electronic health record (EHR) with the biomedical literature. Pseudo Relevance Feedback (PRF) is a kind of classical query modification technique that has shown to be effective in many retrieval models and thus suitable for handling terse language and clinical jargons in EHR. Previous work has introduced a set of constraints (axioms) of traditional PRF model. However, in the feedback document, the importance degree of candidate term and the co-occurrence relationship between a candidate term and a query term. Most methods do not consider both of these factors. Intuitively, terms that have higher co-occurrence degree with a query term are more likely to be related to the query topic. Methods In this paper, we incorporate original HAL model into the Rocchio’s model, and propose a new concept of term proximity feedback weight. A HAL-based Rocchio’s model in the query expansion, called HRoc, is proposed. Meanwhile, we design three normalization methods to better incorporate proximity information to query expansion. Finally, we introduce an adaptive parameter to replace the length of sliding window of HAL model, and it can select window size according to document length. Results Based on 2016 TREC Clinical Support medicine dataset, experimental results demonstrate that the proposed HRoc and HRoc_AP models superior to other advanced models, such as PRoc2 and TF-PRF methods on various evaluation metrics. Among them, compared with the Proc2 and TF-PRF models, the MAP of our model is increased by 8.5% and 12.24% respectively, while the F1 score of our model is increased by 7.86% and 9.88% respectively. Conclusions The proposed HRoc model can effectively enhance the precision and the recall rate of Information Retrieval and gets a more precise result than other models. Furthermore, after introducing self-adaptive parameter, the advanced HRoc_AP model uses less hyper-parameters than other models while enjoys an equivalent performance, which greatly improves the efficiency and applicability of the model and thus helps clinicians to retrieve clinical support document effectively.


2019 ◽  
Vol 69 (2) ◽  
pp. 345-362
Author(s):  
Paula M Mabee ◽  
James P Balhoff ◽  
Wasila M Dahdul ◽  
Hilmar Lapp ◽  
Christopher J Mungall ◽  
...  

Abstract There is a growing body of research on the evolution of anatomy in a wide variety of organisms. Discoveries in this field could be greatly accelerated by computational methods and resources that enable these findings to be compared across different studies and different organisms and linked with the genes responsible for anatomical modifications. Homology is a key concept in comparative anatomy; two important types are historical homology (the similarity of organisms due to common ancestry) and serial homology (the similarity of repeated structures within an organism). We explored how to most effectively represent historical and serial homology across anatomical structures to facilitate computational reasoning. We assembled a collection of homology assertions from the literature with a set of taxon phenotypes for the skeletal elements of vertebrate fins and limbs from the Phenoscape Knowledgebase. Using seven competency questions, we evaluated the reasoning ramifications of two logical models: the Reciprocal Existential Axioms (REA) homology model and the Ancestral Value Axioms (AVA) homology model. The AVA model returned all user-expected results in addition to the search term and any of its subclasses. The AVA model also returns any superclass of the query term in which a homology relationship has been asserted. The REA model returned the user-expected results for five out of seven queries. We identify some challenges of implementing complete homology queries due to limitations of OWL reasoning. This work lays the foundation for homology reasoning to be incorporated into other ontology-based tools, such as those that enable synthetic supermatrix construction and candidate gene discovery. [Homology; ontology; anatomy; morphology; evolution; knowledgebase; phenoscape.]


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