Computational Approaches for Understanding Dynamical Systems: Protein Folding and Assembly - Progress in Molecular Biology and Translational Science

Computational studies of protein aggregation mediated by amyloid: Fibril elongation and secondary nucleation

Computational Approaches for Understanding Dynamical Systems: Protein Folding and Assembly - Progress in Molecular Biology and Translational Science ◽

10.1016/bs.pmbts.2019.12.008 ◽

2020 ◽

pp. 461-504

Author(s):

Yang Cao ◽

Xuan Tang ◽

Miao Yuan ◽

Wei Han

Keyword(s):

Protein Aggregation ◽

Amyloid Fibril ◽

Computational Studies ◽

Secondary Nucleation

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Contributors

Computational Approaches for Understanding Dynamical Systems: Protein Folding and Assembly - Progress in Molecular Biology and Translational Science ◽

10.1016/s1877-1173(20)30031-4 ◽

2020 ◽

pp. ix-xi

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Scale-consistent approach to the derivation of coarse-grained force fields for simulating structure, dynamics, and thermodynamics of biopolymers

Computational Approaches for Understanding Dynamical Systems: Protein Folding and Assembly - Progress in Molecular Biology and Translational Science ◽

10.1016/bs.pmbts.2019.12.004 ◽

2020 ◽

pp. 73-122

Author(s):

Adam Liwo ◽

Cezary Czaplewski ◽

Adam K. Sieradzan ◽

Emilia A. Lubecka ◽

Agnieszka G. Lipska ◽

...

Keyword(s):

Force Fields ◽

Coarse Grained ◽

Structure Dynamics ◽

Consistent Approach

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Protein thermal stability

Computational Approaches for Understanding Dynamical Systems: Protein Folding and Assembly - Progress in Molecular Biology and Translational Science ◽

10.1016/bs.pmbts.2019.12.007 ◽

2020 ◽

pp. 239-272 ◽

Cited By ~ 2

Author(s):

Stepan Timr ◽

Dominique Madern ◽

Fabio Sterpone

Keyword(s):

Thermal Stability ◽

Protein Thermal Stability

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Long-time methods for molecular dynamics simulations: Markov State Models and Milestoning

Computational Approaches for Understanding Dynamical Systems: Protein Folding and Assembly - Progress in Molecular Biology and Translational Science ◽

10.1016/bs.pmbts.2020.01.002 ◽

2020 ◽

pp. 215-237

Author(s):

Brajesh Narayan ◽

Ye Yuan ◽

Arman Fathizadeh ◽

Ron Elber ◽

Nicolae-Viorel Buchete

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Markov State ◽

Markov State Models ◽

Long Time ◽

State Models ◽

Dynamics Simulations

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Minimalistic coarse-grained modeling of viral capsid assembly

Computational Approaches for Understanding Dynamical Systems: Protein Folding and Assembly - Progress in Molecular Biology and Translational Science ◽

10.1016/bs.pmbts.2019.12.003 ◽

2020 ◽

pp. 405-434 ◽

Cited By ~ 1

Author(s):

Szilard N. Fejer

Keyword(s):

Coarse Grained ◽

Viral Capsid ◽

Capsid Assembly

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Computer simulations of protein–membrane systems

Computational Approaches for Understanding Dynamical Systems: Protein Folding and Assembly - Progress in Molecular Biology and Translational Science ◽

10.1016/bs.pmbts.2020.01.001 ◽

2020 ◽

pp. 273-403 ◽

Cited By ~ 1

Author(s):

Jennifer Loschwitz ◽

Olujide O. Olubiyi ◽

Jochen S. Hub ◽

Birgit Strodel ◽

Chetan S. Poojari

Keyword(s):

Computer Simulations ◽

Membrane Systems ◽

Protein Membrane

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Copyright

Computational Approaches for Understanding Dynamical Systems: Protein Folding and Assembly - Progress in Molecular Biology and Translational Science ◽

10.1016/s1877-1173(20)30029-6 ◽

2020 ◽

pp. iv

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Aggregation and coacervation with Monte Carlo simulations

Computational Approaches for Understanding Dynamical Systems: Protein Folding and Assembly - Progress in Molecular Biology and Translational Science ◽

10.1016/bs.pmbts.2019.12.005 ◽

2020 ◽

pp. 505-520

Author(s):

Sandipan Mohanty

Keyword(s):

Monte Carlo ◽

Monte Carlo Simulations

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Pairwise-additive and polarizable atomistic force fields for molecular dynamics simulations of proteins

Computational Approaches for Understanding Dynamical Systems: Protein Folding and Assembly - Progress in Molecular Biology and Translational Science ◽

10.1016/bs.pmbts.2019.12.009 ◽

2020 ◽

pp. 1-71 ◽

Cited By ~ 3

Author(s):

Justin A. Lemkul

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Force Fields ◽

Dynamics Simulations

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Computational Approaches for Understanding Dynamical Systems: Protein Folding and Assembly - Progress in Molecular Biology and Translational Science
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Published By Elsevier

Computational studies of protein aggregation mediated by amyloid: Fibril elongation and secondary nucleation

Contributors

Scale-consistent approach to the derivation of coarse-grained force fields for simulating structure, dynamics, and thermodynamics of biopolymers

Protein thermal stability

Long-time methods for molecular dynamics simulations: Markov State Models and Milestoning

Minimalistic coarse-grained modeling of viral capsid assembly

Computer simulations of protein–membrane systems

Copyright

Aggregation and coacervation with Monte Carlo simulations

Pairwise-additive and polarizable atomistic force fields for molecular dynamics simulations of proteins

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Computational Approaches for Understanding Dynamical Systems: Protein Folding and Assembly - Progress in Molecular Biology and Translational ScienceLatest Publications

TOTAL DOCUMENTS

H-INDEX

Published By Elsevier

Computational studies of protein aggregation mediated by amyloid: Fibril elongation and secondary nucleation

Contributors

Scale-consistent approach to the derivation of coarse-grained force fields for simulating structure, dynamics, and thermodynamics of biopolymers

Protein thermal stability

Long-time methods for molecular dynamics simulations: Markov State Models and Milestoning

Minimalistic coarse-grained modeling of viral capsid assembly

Computer simulations of protein–membrane systems

Copyright

Aggregation and coacervation with Monte Carlo simulations

Pairwise-additive and polarizable atomistic force fields for molecular dynamics simulations of proteins

Computational Approaches for Understanding Dynamical Systems: Protein Folding and Assembly - Progress in Molecular Biology and Translational Science
Latest Publications