Scalable spatio‐temporal Bayesian analysis of high‐dimensional electroencephalography data

2021 ◽  
Vol 49 (1) ◽  
pp. 107-128
Author(s):  
Shariq Mohammed ◽  
Dipak K. Dey
2014 ◽  
Vol 29 (4) ◽  
pp. 619-639 ◽  
Author(s):  
Y. Ritov ◽  
P. J. Bickel ◽  
A. C. Gamst ◽  
B. J. K. Kleijn

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Kinley Wangdi ◽  
Kinley Penjor ◽  
Tsheten Tsheten ◽  
Chachu Tshering ◽  
Peter Gething ◽  
...  

Author(s):  
Mushegh Rafayelyan ◽  
Jonathan Dong ◽  
Yongqi Tan ◽  
Florent Krzakala ◽  
Sylvain Gigan

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Sashikumaar Ganesan ◽  
Deepak Subramani

AbstractA novel predictive modeling framework for the spread of infectious diseases using high-dimensional partial differential equations is developed and implemented. A scalar function representing the infected population is defined on a high-dimensional space and its evolution over all the directions is described by a population balance equation (PBE). New infections are introduced among the susceptible population from a non-quarantined infected population based on their interaction, adherence to distancing norms, hygiene levels and any other societal interventions. Moreover, recovery, death, immunity and all aforementioned parameters are modeled on the high-dimensional space. To epitomize the capabilities and features of the above framework, prognostic estimates of Covid-19 spread using a six-dimensional (time, 2D space, infection severity, duration of infection, and population age) PBE is presented. Further, scenario analysis for different policy interventions and population behavior is presented, throwing more insights into the spatio-temporal spread of infections across duration of disease, infection severity and age of the population. These insights could be used for science-informed policy planning.


2020 ◽  
Author(s):  
Britta Velten ◽  
Jana M. Braunger ◽  
Damien Arnol ◽  
Ricard Argelaguet ◽  
Oliver Stegle

AbstractFactor analysis is among the most-widely used methods for dimensionality reduction in genome biology, with applications from personalized health to single-cell studies. Existing implementations of factor analysis assume independence of the observed samples, an assumption that fails in emerging spatio-temporal profiling studies. Here, we present MEFISTO, a flexible and versatile toolbox for modelling high-dimensional data when spatial or temporal dependencies between the samples are known. MEFISTO maintains the established benefits of factor analysis for multi-modal data, but enables performing spatio-temporally informed dimensionality reduction, interpolation and separation of smooth from non-smooth patterns of variation. Moreover, MEFISTO can integrate multiple related datasets by simultaneously identifying and aligning the underlying patterns of variation in a data-driven manner. We demonstrate MEFISTO through applications to an evolutionary atlas of mammalian organ development, where the model reveals conserved and evolutionary diverged developmental programs. In applications to a longitudinal microbiome study in infants, birth mode and diet were highlighted as major causes for heterogeneity in the temporally-resolved microbiome over the first years of life. Finally, we demonstrate that the proposed framework can also be applied to spatially resolved transcriptomics.


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