The HMMER Web Server for Protein Sequence Similarity Search

Current Protocols in Bioinformatics ◽

10.1002/cpbi.40 ◽

2017 ◽

Vol 60 (1) ◽

Author(s):

Ananth Prakash ◽

Matt Jeffryes ◽

Alex Bateman ◽

Robert D. Finn

Keyword(s):

Protein Sequence ◽

Similarity Search ◽

Sequence Similarity ◽

Sequence Similarity Search ◽

Protein Sequence Similarity

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PROCAIN server for remote protein sequence similarity search

Bioinformatics ◽

10.1093/bioinformatics/btp346 ◽

2009 ◽

Vol 25 (16) ◽

pp. 2076-2077 ◽

Author(s):

Y. Wang ◽

R. I. Sadreyev ◽

N. V. Grishin

Keyword(s):

Protein Sequence ◽

Similarity Search ◽

Sequence Similarity ◽

Sequence Similarity Search ◽

Protein Sequence Similarity

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Automat and BLAST: comparison of two protein sequence similarity search programs

Bioinformatics ◽

10.1093/bioinformatics/11.3.261 ◽

1995 ◽

Vol 11 (3) ◽

pp. 261-272 ◽

Author(s):

H. Cantalloube ◽

G. Labesse ◽

J. Chomilier ◽

C. Nahum ◽

Y.Y. Cho ◽

...

Keyword(s):

Protein Sequence ◽

Similarity Search ◽

Sequence Similarity ◽

Sequence Similarity Search ◽

Protein Sequence Similarity

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Protein sequence-similarity search acceleration using a heuristic algorithm with a sensitive matrix

Journal of Structural and Functional Genomics ◽

10.1007/s10969-016-9210-4 ◽

2016 ◽

Vol 17 (4) ◽

pp. 147-154

Author(s):

Kyungtaek Lim ◽

Kazunori D. Yamada ◽

Martin C. Frith ◽

Kentaro Tomii

Keyword(s):

Heuristic Algorithm ◽

Protein Sequence ◽

Similarity Search ◽

Sequence Similarity ◽

Sequence Similarity Search ◽

Protein Sequence Similarity

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Faculty Opinions recommendation of Using homology relations within a database markedly boosts protein sequence similarity search.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.725532236.793528108 ◽

2017 ◽

Author(s):

William Pearson

Keyword(s):

Protein Sequence ◽

Similarity Search ◽

Sequence Similarity ◽

Sequence Similarity Search ◽

Protein Sequence Similarity

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Comparative accuracy of methods for protein sequence similarity search

Bioinformatics ◽

10.1093/bioinformatics/14.1.40 ◽

1998 ◽

Vol 14 (1) ◽

pp. 40-47 ◽

Author(s):

P. Agarwal ◽

D. J. States

Keyword(s):

Protein Sequence ◽

Similarity Search ◽

Sequence Similarity ◽

Sequence Similarity Search ◽

Comparative Accuracy ◽

Protein Sequence Similarity

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Protein Sequence Similarity Search Suitable for Parallel Implementation

International Journal of Computer Applications ◽

10.5120/7935-1246 ◽

2012 ◽

Vol 50 (22) ◽

pp. 1-3

Author(s):

Himanshu S.Mazumdar ◽

Maulika S. Patel

Keyword(s):

Protein Sequence ◽

Similarity Search ◽

Parallel Implementation ◽

Sequence Similarity ◽

Sequence Similarity Search ◽

Protein Sequence Similarity

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Using bioinformatic protein sequence similarity to investigate if SARS CoV-2 infection could cause an ocular autoimmune inflammatory reactions?

Experimental Eye Research ◽

10.1016/j.exer.2020.108433 ◽

2021 ◽

Vol 203 ◽

pp. 108433

Author(s):

Işıl Kutlutürk Karagöz ◽

Marion R. Munk ◽

Mücahit Kaya ◽

René Rückert ◽

Mustafa Yıldırım ◽

...

Keyword(s):

Protein Sequence ◽

Sequence Similarity ◽

Inflammatory Reactions ◽

Protein Sequence Similarity

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EightyDVec: a method for protein sequence similarity analysis using physicochemical properties of amino acids

Computer Methods in Biomechanics and Biomedical Engineering Imaging & Visualization ◽

10.1080/21681163.2021.1956369 ◽

2021 ◽

pp. 1-11

Author(s):

Ranjeet Kumar Rout ◽

Saiyed Umer ◽

Sabha Sheikh ◽

Sanchit Sindhwani ◽

Smitarani Pati

Keyword(s):

Amino Acids ◽

Physicochemical Properties ◽

Protein Sequence ◽

Sequence Similarity ◽

Similarity Analysis ◽

Protein Sequence Similarity ◽

Sequence Similarity Analysis

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Filtering Redundancies For Sequence Similarity Search Programs

Journal of Biomolecular Structure and Dynamics ◽

10.1080/07391102.2005.10507020 ◽

2005 ◽

Vol 22 (4) ◽

pp. 487-492

Author(s):

Hubert Cantalloube ◽

Jacques Chomilier ◽

Sylvain Chiusa ◽

Mathieu Lonquety ◽

Jean-Louis Spadoni ◽

...

Keyword(s):

Similarity Search ◽

Sequence Similarity ◽

Sequence Similarity Search

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Language engineering and information theoretic methods in protein sequence similarity studies

Computational Intelligence in Medical Informatics - Studies in Computational Intelligence ◽

10.1007/978-3-540-75767-2_8 ◽

2008 ◽

pp. 151-183 ◽

Author(s):

A. Bogan-Marta ◽

A. Hategan ◽

I. Pitas

Keyword(s):

Protein Sequence ◽

Sequence Similarity ◽

Language Engineering ◽

Information Theoretic ◽

Protein Sequence Similarity ◽

Information Theoretic Methods

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