EightyDVec: a method for protein sequence similarity analysis using physicochemical properties of amino acids

Author(s):  
Ranjeet Kumar Rout ◽  
Saiyed Umer ◽  
Sabha Sheikh ◽  
Sanchit Sindhwani ◽  
Smitarani Pati
2019 ◽  
Vol 71 (4) ◽  
pp. 639-645
Author(s):  
Li-Ying Zhang ◽  
Juan Li ◽  
Xing-Fu Zha

Spermatogenesis is a fundamental process in sexual reproduction. In this study, we cloned a 716-bp cDNA of a testis-biased gene in Bombyx mori, named as BmRS-TS, which encodes a polypeptide of 164 amino acids, containing 26.7% arginine and serine residues. Sequence similarity analysis showed that BmRS-TS is a lepidopteran-specific gene. Results of RT-PCR and Western analysis revealed that BmRS-TS was expressed predominantly in the testis. Immunohistochemistry assay showed that the BmRS-TS protein was mostly located in primary spermatocytes. Moreover, knockdown of BmRS-TS by RNA interference (RNAi) showed that the morphology of the mature sperm was abnormal and that sperm bundles were broken up. Our results suggest that BmRS-TS plays an important role in silkworm spermatogenesis and provide some clues for understanding the mechanism that underlies spermatogenesis, which can be used as a reference for other lepidopterans.


2021 ◽  
Vol 203 ◽  
pp. 108433
Author(s):  
Işıl Kutlutürk Karagöz ◽  
Marion R. Munk ◽  
Mücahit Kaya ◽  
René Rückert ◽  
Mustafa Yıldırım ◽  
...  

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