A parallel hash‐based method for local sequence alignment

2021 ◽  
Author(s):  
Aghaee‐Meybodi Esmat ◽  
Nezarat Amin ◽  
Emadi Sima ◽  
Ghaffari Mohammad Reza
Keyword(s):  
Sequence Alignment ◽  
Local Sequence Alignment ◽  
Local Sequence

An Improved Hybridized Evolutionary Algorithm Based on Rules for Local Sequence Alignment

2019 ◽  
pp. 215-237
Author(s):  
Jayapriya J. ◽  
Michael Arock
Keyword(s):  
Evolutionary Algorithm ◽  
Sequence Alignment ◽  
Biological Database ◽  
Computational Time ◽  
Matched Pair ◽  
Rank Test ◽  
Local Alignment ◽  
Local Sequence Alignment ◽  
Local Sequence ◽  
Signed Rank Test

In bioinformatics, sequence alignment is the heart of the sequence analysis. Sequence can be aligned locally or globally depending upon the biologist's need for the analysis. As local sequence alignment is considered important, there is demand for an efficient algorithm. Due to the enormous sequences in the biological database, there is a trade-off between computational time and accuracy. In general, all biological problems are considered as computational intensive problems. To solve these kinds of problems, evolutionary-based algorithms are proficiently used. This chapter focuses local alignment in molecular sequences and proposes an improvised hybrid evolutionary algorithm using particle swarm optimization and cellular automata (IPSOCA). The efficiency of the proposed algorithm is proved using the experimental analysis for benchmark dataset BaliBase and compared with other state-of-the-art techniques. Using the Wilcoxon matched pair signed rank test, the significance of the proposed algorithm is explicated.

scholarly journals BALSA: Bayesian algorithm for local sequence alignment

2002 ◽  
Vol 30 (5) ◽  
pp. 1268-1277 ◽  
Author(s):  
B.-J. M. Webb
Keyword(s):  
Sequence Alignment ◽  
Bayesian Algorithm ◽  
Local Sequence Alignment ◽  
Local Sequence

An integrated algorithm for local sequence alignment

2014 ◽  
Vol 3 (1) ◽  
Author(s):  
Sarwar Kamal ◽  
Mohammad Ibrahim Khan
Keyword(s):  
Sequence Alignment ◽  
Local Sequence Alignment ◽  
Local Sequence

scholarly journals Global and local sequence alignment with a bounded number of gaps

2015 ◽  
Vol 582 ◽  
pp. 1-16 ◽  
Author(s):  
Carl Barton ◽  
Tomáš Flouri ◽  
Costas S. Iliopoulos ◽  
Solon P. Pissis
Keyword(s):  
Sequence Alignment ◽  
Local Sequence Alignment ◽  
Bounded Number ◽  
Local Sequence ◽  
Global And Local

Rapid Significance Estimation in Local Sequence Alignment with Gaps

2002 ◽  
Vol 9 (2) ◽  
pp. 243-260 ◽  
Author(s):  
Ralf Bundschuh
Keyword(s):  
Sequence Alignment ◽  
Local Sequence Alignment ◽  
Local Sequence
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