Applications of the Bacteriophage Mu In Vitro Transposition Reaction and Genome Manipulation via Electroporation of DNA Transposition Complexes

Author(s):  
Saija Haapa-Paananen ◽  
Harri Savilahti
1999 ◽  
Vol 9 (3) ◽  
pp. 308-315 ◽  
Author(s):  
Saija Haapa ◽  
Sini Suomalainen ◽  
Simo Eerikäinen ◽  
Matti Airaksinen ◽  
Lars Paulin ◽  
...  

A highly efficient DNA sequencing strategy was developed on the basis of the bacteriophage Mu in vitro DNA transposition reaction. In the reaction, an artificial transposon with a chloramphenicol acetyltransferase (cat) gene as a selectable marker integrated into the target plasmid DNA containing a 10.3-kb mouse genomic insert to be sequenced. Bacterial clones carrying plasmids with the transposon insertions in different positions were produced by transforming transposition reaction products into Escherichia coli cells that were then selected on appropriate selection plates. Plasmids from individual clones were isolated and used as templates for DNA sequencing, each with two primers specific for the transposon sequence but reading the sequence into opposite directions, thus creating a minicontig. By combining the information from overlapping minicontigs, the sequence of the entire 10,288-bp region of mouse genome including six exons of mouse Kcc2 gene was obtained. The results indicated that the described methodology is extremely well suited for DNA sequencing projects in which considerable sequence information is on demand. In addition, massive DNA sequencing projects, including those of full genomes, are expected to benefit substantially from the Mu strategy.[The sequence data reported in this paper have been submitted to the GenBank data library under accession no. AJ011033.]


2002 ◽  
Vol 68 (2) ◽  
pp. 705-712 ◽  
Author(s):  
Arja Lamberg ◽  
Sari Nieminen ◽  
Mingqiang Qiao ◽  
Harri Savilahti

ABSTRACT An efficient insertion mutagenesis strategy for bacterial genomes based on the phage Mu DNA transposition reaction was developed. Incubation of MuA transposase protein with artificial mini-Mu transposon DNA in the absence of divalent cations in vitro resulted in stable but inactive Mu DNA transposition complexes, or transpososomes. Following delivery into bacterial cells by electroporation, the complexes were activated for DNA transposition chemistry after encountering divalent metal ions within the cells. Mini-Mu transposons were integrated into bacterial chromosomes with efficiencies ranging from 104 to 106 CFU/μg of input transposon DNA in the four species tested, i.e., Escherichia coli, Salmonella enterica serovar Typhimurium, Erwinia carotovora, and Yersinia enterocolitica. Efficiency of integration was influenced mostly by the competence status of a given strain or batch of bacteria. An accurate 5-bp target site duplication flanking the transposon, a hallmark of Mu transposition, was generated upon mini-Mu integration into the genome, indicating that a genuine DNA transposition reaction was reproduced within the cells of the bacteria studied. This insertion mutagenesis strategy for microbial genomes may be applicable to a variety of organisms provided that a means to introduce DNA into their cells is available.


Cell ◽  
1987 ◽  
Vol 49 (2) ◽  
pp. 253-262 ◽  
Author(s):  
Michael G. Surette ◽  
Shilpa J. Buch ◽  
George Chaconas

1983 ◽  
Vol 258 (7) ◽  
pp. 4293-4297
Author(s):  
N P Higgins ◽  
D Moncecchi ◽  
P Manlapaz-Ramos ◽  
B M Olivera

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