scholarly journals Maximising Overlap Score in DNA Sequence Assembly Problem by Stochastic Diffusion Search

2016 ◽  
pp. 301-321
Author(s):  
Fatimah Majid al-Rifaie ◽  
Mohammad Majid al-Rifaie
Keyword(s):  
Dna Sequence ◽  
Sequence Assembly ◽  
Stochastic Diffusion ◽  
Dna Sequence Assembly ◽  
Assembly Problem ◽  
Stochastic Diffusion Search

scholarly journals A Combined Approach for de novo DNA Sequence Assembly of Very Short Reads

2011 ◽  
Vol 4 ◽  
pp. 21-33 ◽  
Author(s):  
Wisnu Ananta Kusuma ◽  
Takashi Ishida ◽  
Yutaka Akiyama
Keyword(s):  
Dna Sequence ◽  
De Novo ◽  
Sequence Assembly ◽  
Combined Approach ◽  
Short Reads ◽  
Dna Sequence Assembly

scholarly journals A new DNA sequence assembly program

1995 ◽  
Vol 23 (24) ◽  
pp. 4992-4999 ◽  
Author(s):  
James K. Bonfield ◽  
Kathryn F. Smith ◽  
Rodger Staden
Keyword(s):  
Dna Sequence ◽  
Sequence Assembly ◽  
Dna Sequence Assembly

scholarly journals Similarity thresholds used in DNA sequence assembly from short reads can reduce the comparability of population histories across species

PeerJ ◽  
2015 ◽  
Vol 3 ◽  
pp. e895 ◽  
Author(s):  
Michael G. Harvey ◽  
Caroline Duffie Judy ◽  
Glenn F. Seeholzer ◽  
James M. Maley ◽  
Gary R. Graves ◽  
...  
Keyword(s):  
Dna Sequence ◽  
Sequence Assembly ◽  
Short Reads ◽  
Dna Sequence Assembly ◽  
Similarity Thresholds

Strategy of Repeats in DNA Sequence Assembly

2011 ◽  
Vol 58-60 ◽  
pp. 927-931
Author(s):  
Yan An Zhang ◽  
Min Feng Xue ◽  
Lin Li ◽  
Yue Qi Han
Keyword(s):  
Dna Sequence ◽  
Difficult Problem ◽  
Sequence Assembly ◽  
Developing Strategy ◽  
Mate Pair ◽  
Dna Sequence Assembly ◽  
Pair Analysis

This study is a concentrated at the strategy of repeats in DNA sequence assembly. To deal with the sequences with repeats is a difficult problem in DNA sequence assembly. On basis of strategy learning about masking repeats，this study proposes a method based on mate-pair analysis, and a developing strategy on Amos platform.

Sign in / Sign up

Export Citation Format

Share Document