Towards a Java Library to Support Runtime Metaprogramming

2018 ◽  
pp. 224-242
Author(s):  
Ignacio Lagartos ◽  
Jose Manuel Redondo ◽  
Francisco Ortin
Keyword(s):  
Java Library

scholarly journals Polyrun: A Java library for sampling from the bounded convex polytopes

SoftwareX ◽  
2021 ◽  
Vol 13 ◽  
pp. 100659
Author(s):  
Krzysztof Ciomek ◽  
Miłosz Kadziński
Keyword(s):  
Convex Polytopes ◽  
Bounded Convex ◽  
Java Library

scholarly journals BioCommons: a robust java library for RNA structural bioinformatics

2021 ◽  
Author(s):  
Tomasz Zok
Keyword(s):  
Source Code ◽  
Structural Bioinformatics ◽  
Supplementary Information ◽  
Supplementary Data ◽  
Bioinformatic Tools ◽  
Data Formats ◽  
Central Repository ◽  
Diverse Data ◽  
2D And 3D ◽  
Java Library

Abstract Motivation Biomolecular structures come in multiple representations and diverse data formats. Their incompatibility with the requirements of data analysis programs significantly hinders the analytics and the creation of new structure-oriented bioinformatic tools. Therefore, the need for robust libraries of data processing functions is still growing. Results BioCommons is an open-source, Java library for structural bioinformatics. It contains many functions working with the 2D and 3D structures of biomolecules, with a particular emphasis on RNA. Availability and implementation The library is available in Maven Central Repository and its source code is hosted on GitHub: https://github.com/tzok/BioCommons Supplementary information Supplementary data are available at Bioinformatics online.

Offline time-stamping using TPM and its Java library

2012 ◽  
Author(s):  
Shohei Kakei ◽  
Masami Mohri ◽  
Yoshiaki Shiraishi ◽  
Ryoji Noguchi
Keyword(s):  
Java Library

The Chemistry Development Kit (CDK): An Open-Source Java Library for Chemo- and Bioinformatics.

ChemInform ◽  
2003 ◽  
Vol 34 (21) ◽  
Author(s):  
Christoph Steinbeck ◽  
Yongquan Han ◽  
Stefan Kuhn ◽  
Oliver Horlacher ◽  
Edgar Luttmann ◽  
...  
Keyword(s):  
Open Source ◽  
Chemistry Development ◽  
Java Library

scholarly journals Hipster: An open source Java library for heuristic search

2014 ◽  
Author(s):  
P. Rodriguez-Mier ◽  
A. Gonzalez-Sieira ◽  
M. Mucientes ◽  
M. Lama ◽  
A. Bugarin
Keyword(s):  
Open Source ◽  
Heuristic Search ◽  
Java Library

Development of a Java Library to Solve the School Bus Routing Problem

2020 ◽  
pp. 175-196
Author(s):  
Alberto Ochoa-Zezzatti ◽  
Ulises Carbajal ◽  
Oscar Castillo ◽  
José Mejía ◽  
Gilberto Rivera ◽  
...  
Keyword(s):  
School Bus ◽  
Routing Problem ◽  
Bus Routing ◽  
Java Library

scholarly journals JINDY: A java library to support invokedynamic

2014 ◽  
Vol 11 (1) ◽  
pp. 47-68 ◽  
Author(s):  
Patricia Conde ◽  
Francisco Ortin
Keyword(s):  
Virtual Machine ◽  
Programming Language ◽  
Java Virtual Machine ◽  
Memory Consumption ◽  
Java Programming ◽  
Abstraction Level ◽  
Java Platform ◽  
Runtime Performance ◽  
And Performance ◽  
Java Library

Java 7 has included the new invokedynamic opcode in the Java virtual machine. This new instruction allows the user to define method linkage at runtime. Once the link is established, the virtual machine performs its common optimizations, providing better runtime performance than reflection. However, this feature has not been offered at the abstraction level of the Java programming language. Since the functionality of the new opcode is not provided as a library, the existing languages in the Java platform can only use it at the assembly level. For this reason, we have developed the JINDY library that offers invokedynamic to any programming language in the Java platform. JINDY supports three modes of use, establishing a trade-off between runtime performance and flexibility. A runtime performance and memory consumption evaluation is presented. We analyze the efficiency of JINDY compared to reflection, the MethodHandle class in Java 7 and the Dynalink library. The memory and performance costs compared to the invokedynamic opcode are also measured.

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