Phylogeography and demographic history of the Pacific smelt Osmerus dentex inferred from mitochondrial DNA variation

Polar Biology ◽  
2018 ◽  
Vol 41 (5) ◽  
pp. 877-896 ◽  
Author(s):  
Lubov A. Skurikhina ◽  
Alla G. Oleinik ◽  
Andrey D. Kukhlevsky ◽  
Natalia E. Kovpak ◽  
Sergey V. Frolov ◽  
...  
2016 ◽  
Vol 3 (2) ◽  
pp. 150250 ◽  
Author(s):  
Claudio Ottoni ◽  
Rita Rasteiro ◽  
Rinse Willet ◽  
Johan Claeys ◽  
Peter Talloen ◽  
...  

More than two decades of archaeological research at the site of Sagalassos, in southwest Turkey, resulted in the study of the former urban settlement in all its features. Originally settled in late Classical/early Hellenistic times, possibly from the later fifth century BCE onwards, the city of Sagalassos and its surrounding territory saw empires come and go. The Plague of Justinian in the sixth century CE, which is considered to have caused the death of up to a third of the population in Anatolia, and an earthquake in the seventh century CE, which is attested to have devastated many monuments in the city, may have severely affected the contemporary Sagalassos community. Human occupation continued, however, and Byzantine Sagalassos was eventually abandoned around 1200 CE. In order to investigate whether these historical events resulted in demographic changes across time, we compared the mitochondrial DNA variation of two population samples from Sagalassos (Roman and Middle Byzantine) and a modern sample from the nearby town of Ağlasun. Our analyses revealed no genetic discontinuity across two millennia in the region and Bayesian coalescence-based simulations indicated that a major population decline in the area coincided with the final abandonment of Sagalassos, rather than with the Plague of Justinian or the mentioned earthquake.


The Auk ◽  
2003 ◽  
Vol 120 (2) ◽  
pp. 346-361
Author(s):  
Erik A. Sgariglia ◽  
Kevin J. Burns

Abstract Distribution of genealogical lineages within a species is likely the result of a complicated series of ecological and historical events. Nested-clade analysis is specifically designed as an objective phylogeographic approach for inferring evolutionary processes on a spatial and temporal scale for small subclades within a larger set of intraspecific relationships. Here, we use nested-clade analysis as well as other phylogeographic methods to investigate the evolutionary history of California Thrasher (Toxostoma redivivum) populations. Inferences resulting from nested clade analysis suggest a history that includes past fragmentation, range expansion, and isolation-by-distance. Along with root information, those inferences enable the construction of a biogeographic scenario for this species involving general southern ancestry, an early north–south division, northward range expansion, and a southward back-expansion into an already populated southern region. Isolation-by-distance is also identified, particularly in southern California, indicating that gene flow between localities does occur but is restricted. Many conclusions drawn from this study are concordant with geologic data as well as phylogeographic scenarios drawn for other codistributed California taxa.


2018 ◽  
Vol 159 (3) ◽  
pp. 643-655 ◽  
Author(s):  
Gisele Pires Mendonça Dantas ◽  
Gabriella Cardoso Maria ◽  
Anna Carolina Milo Marasco ◽  
Larissa Tormena Castro ◽  
Vanessa Simão Almeida ◽  
...  

2013 ◽  
Vol 52 (1) ◽  
Author(s):  
Matthew Tenywa Mwanja ◽  
Vincent Muwanika ◽  
Charles Masembe ◽  
Sylvester Nyakaana ◽  
Wilson Waiswa Mwanja

The Auk ◽  
2002 ◽  
Vol 119 (3) ◽  
pp. 603-620 ◽  
Author(s):  
Pierre-André Crochet ◽  
Jean-Dominique Lebreton ◽  
François Bonhomme

Abstract Although the large white-headed gull group (genus Larus) has long been a model in speciation studies, the systematic status and evolutionary relationships of many of its taxa remain unresolved. We used mitochondrial DNA control region and cytochrome-b gene sequences in an attempt to resolve some of those uncertainties. In contrast to previously published results based on nuclear markers, mitochondrial DNA was found to be strongly structured among species, indicating that mitochondrial gene flow is very low. Phylogenetic relationships remain largely unresolved, mainly because of the low amount of variation between species. Horizontal transfer of mitochondrial lineages is demonstrated or suspected between most taxa and obscured the reconstruction of the history of the group. The Mediterranean form michahellis was as differentiated from the other western European species as these are from each others, confirming it is neither conspecific with L. fuscus nor with L. argentatus. The forms fuscus and graellsii do not show any significant differences in haplotypes frequencies, arguing for their subspecific status.


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