Evolutionary dynamics of an at-rich satellite DNA and its contribution to karyotype differentiation in wild diploid Arachis species

2016 ◽  
Vol 292 (2) ◽  
pp. 283-296 ◽  
Author(s):  
Sergio Sebastián Samoluk ◽  
Germán Robledo ◽  
David Bertioli ◽  
José Guillermo Seijo
PROTOPLASMA ◽  
2016 ◽  
Vol 254 (2) ◽  
pp. 791-801 ◽  
Author(s):  
Tiago Ribeiro ◽  
Karla G. B. dos Santos ◽  
Manon M. S. Richard ◽  
Mireille Sévignac ◽  
Vincent Thareau ◽  
...  

2005 ◽  
Vol 13 (8) ◽  
pp. 795-807 ◽  
Author(s):  
Teresa Palomeque ◽  
Martín Muñoz-López ◽  
José A. Carrillo ◽  
Pedro Lorite

Cells ◽  
2020 ◽  
Vol 9 (12) ◽  
pp. 2714
Author(s):  
Syed Farhan Ahmad ◽  
Worapong Singchat ◽  
Maryam Jehangir ◽  
Aorarat Suntronpong ◽  
Thitipong Panthum ◽  
...  

A substantial portion of the primate genome is composed of non-coding regions, so-called “dark matter”, which includes an abundance of tandemly repeated sequences called satellite DNA. Collectively known as the satellitome, this genomic component offers exciting evolutionary insights into aspects of primate genome biology that raise new questions and challenge existing paradigms. A complete human reference genome was recently reported with telomere-to-telomere human X chromosome assembly that resolved hundreds of dark regions, encompassing a 3.1 Mb centromeric satellite array that had not been identified previously. With the recent exponential increase in the availability of primate genomes, and the development of modern genomic and bioinformatics tools, extensive growth in our knowledge concerning the structure, function, and evolution of satellite elements is expected. The current state of knowledge on this topic is summarized, highlighting various types of primate-specific satellite repeats to compare their proportions across diverse lineages. Inter- and intraspecific variation of satellite repeats in the primate genome are reviewed. The functional significance of these sequences is discussed by describing how the transcriptional activity of satellite repeats can affect gene expression during different cellular processes. Sex-linked satellites are outlined, together with their respective genomic organization. Mechanisms are proposed whereby satellite repeats might have emerged as novel sequences during different evolutionary phases. Finally, the main challenges that hinder the detection of satellite DNA are outlined and an overview of the latest methodologies to address technological limitations is presented.


2015 ◽  
Vol 23 (3) ◽  
pp. 441-461 ◽  
Author(s):  
Verónica Rojo ◽  
Andrés Martínez-Lage ◽  
Massimo Giovannotti ◽  
Ana M. González-Tizón ◽  
Paola Nisi Cerioni ◽  
...  

Gene ◽  
2004 ◽  
Vol 332 ◽  
pp. 159-168 ◽  
Author(s):  
Pedro Lorite ◽  
José Antonio Carrillo ◽  
Alberto Tinaut ◽  
Teresa Palomeque

Genome ◽  
2003 ◽  
Vol 46 (2) ◽  
pp. 213-223 ◽  
Author(s):  
José Galián ◽  
Alfried P Vogler

Satellite repeat elements are an abundant component of eukaryotic genomes, but not enough is known about their evolutionary dynamics and their involvement in karyotype and species differentiation. We report the nucleotide sequence, chromosomal localization, and evolutionary dynamics of a repetitive DNA element of the tiger beetle species pair Cicindela maroccana and Cicindela campestris. The element was detected after restriction digest of C. maroccana total genomic DNA with EcoRI as a single band and its multimers on agarose gels. Cloning and sequencing of several isolates revealed a consensus sequence of 383 bp with no internal repeat structure and no detectable similarity to any entry in GenBank. Hybridization of the satellite unit to C. maroccana mitotic and meiotic chromosomes revealed the presence of this repetitive DNA in the centromeres of all chromosomes except the Y chromosome, which exhibited only a very weak signal in its short arm. PCR-based tests for this satellite in related species revealed its presence in the sister species C. campestris, but not in other closely related species. Phylogenetic analysis of PCR products revealed well-supported clades that generally separate copies from each species. Because both species exhibit the multiple X chromosome karyotypic system common to Cicindela, but differ in their X chromosome numbers (four in C. maroccana vs. three in C. campestris), structural differences could also be investigated with regard to the position of satellites in a newly arisen X chromosome. We find the satellite in a centromeric position in all X chromosomes of C. maroccana, suggesting that the origin of the additional X chromosome involves multiple karyotypic rearrangements.Key words: chromosome evolution, concerted evolution, Cicindela, Coleoptera, satellite DNA.


1991 ◽  
Vol 83 (4) ◽  
pp. 560-567 ◽  
Author(s):  
M. B. Peoples ◽  
C. A. Atkins ◽  
J. S. Pate ◽  
K. Chong ◽  
A. W. Faizah ◽  
...  

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