Genetic diversity in the mtDNA control region and population structure in the small yellow croaker Larimichthys polyactis

2009 ◽  
Vol 85 (4) ◽  
pp. 303-314 ◽  
Author(s):  
Yongshuang Xiao ◽  
Yan Zhang ◽  
Tianxiang Gao ◽  
Takashi Yanagimoto ◽  
Mamoru Yabe ◽  
...  
2019 ◽  
Vol 32 ◽  
pp. 16
Author(s):  
Qiqun Cheng ◽  
Wenming Chen ◽  
Li Ma

Small yellow croaker (Larimichthys polyactis), a member of family Sciaenidae, is mainly distributed in the northwestern Pacific Ocean. To assess the genetic diversity and population structure of this species across its range, we genotyped 150 L. polyactis individuals sampled in five locations along the coast of the Yellow and East China seas using 20 polymorphic microsatellites. A total of 499 alleles were detected at 20 loci across all individuals, and a relatively high level of genetic diversity was observed, with observed heterozygosity (Ho), expected heterozygosity (He) and polymorphic information content (PIC) ranging from 0.233 to 1.000, from 0.438 to 0.955, and from 0.367 to 0.953 per locus-location combination, respectively. Analysis of molecular variance (AMOVA) (FST = 0.00915, P < 0.001), pairwise FST, and corrected average pairwise differences indicated that there was extremely low, but statistically significant genetic differentiation among the studied populations. However, Bayesian assignment analysis revealed a high number of immigrants among populations and no obvious genetic differentiation. The Wilcoxon signed-rank test and mode-shift indicator of allele frequency distribution support the inferrence that L. polyactis had not experienced a recent genetic bottleneck. Overall, the results suggest that, despite low genetic differentiation in this species, the small yellow croaker forms a single panmictic population with high genetic variation and gene flow in the studied area. This study will provide useful information for conservation and sustainable exploitation of this important aquatic living resource.


2013 ◽  
Vol 25 (6) ◽  
pp. 473-481 ◽  
Author(s):  
Yongshuang Xiao ◽  
Guijing Ren ◽  
Na Song ◽  
Jun Li ◽  
Tianxiang Gao

2016 ◽  
Vol 24 (2) ◽  
pp. 85-97 ◽  
Author(s):  
Sylvanus A. Nwafili ◽  
Tian-Xiang Gao

Abstract The genetic diversity and population structure of Chrysichthys nigrodigitatus were evaluated using a 443 base pair fragment of the mitochondrial control region. Among the eight populations collected comprising 129 individuals, a total of 89 polymorphic sites defined 57 distinct haplotypes. The mean haplotype diversity and nucleotide diversity of the eight populations were 0.966±0.006 and 0.0359±0.004, respectively. Analysis of molecular variance showed significant genetic differentiation among the eight populations (FST =0.34; P < 0.01). The present results revealed that C. nigrodigitatus populations had a high level of genetic diversity and distinct population structures. We report the existence of two monophyletic matrilineal lineages with mean genetic distance of 10.5% between them. Non-significant negative Tajima’s D and Fu’s Fs for more than half the populations suggests that the wild populations of C. nigrodigitatus underwent a recent population expansion, although a weak one since the late Pleistocene.


2017 ◽  
Vol 53 (2) ◽  
pp. 233-241 ◽  
Author(s):  
Yu. Ya. Khrunyk ◽  
V. D. Bogdanov ◽  
L. E. Yalkovskaya ◽  
A. R. Koporikov ◽  
S. B. Rakitin ◽  
...  

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