Molecular phylogeny of 21 tropical bamboo species reconstructed by integrating non-coding internal transcribed spacer (ITS1 and 2) sequences and their consensus secondary structure

Genetica ◽  
2017 ◽  
Vol 145 (3) ◽  
pp. 319-333 ◽  
Author(s):  
Jayadri Sekhar Ghosh ◽  
Samik Bhattacharya ◽  
Amita Pal
Keyword(s):  
Secondary Structure ◽  
Molecular Phylogeny ◽  
Internal Transcribed Spacer ◽  
Bamboo Species ◽  
Consensus Secondary Structure

Pseudohydnum brunneiceps (Auriculariales, Basidiomycota), a new species from Central China

Phytotaxa ◽  
2020 ◽  
Vol 441 (1) ◽  
pp. 87-94
Author(s):  
YAN-LIU CHEN ◽  
MING-SHENG SU ◽  
LIN-PING ZHANG ◽  
QIN ZOU ◽  
FEI WU ◽  
...  
Keyword(s):  
New Species ◽  
Molecular Phylogeny ◽  
Dna Sequences ◽  
Internal Transcribed Spacer ◽  
Phylogenetic Analyses ◽  
Central China ◽  
Jiangxi Province ◽  
Line Drawings ◽  
A New Species ◽  
Representative Samples

Pseudohydnum brunneiceps is described as a new species from Jiangxi Province, central China. Morphologically, it is characterized by a gelatinous basidiocarps, pilei pale yellowish brown, dark reddish brown to blackish velutinate, spines conical and white, and basidiospores globose to broadly ellipsoidal. Phylogenetic analyses of DNA sequences from partial 28S region and internal transcribed spacer (ITS) also confirm that P. brunneiceps forms an independent lineage within Pseudohydnum. A description, photographs of the fresh basidiomata and line-drawings of the microstructures are provided. In addition, the previous records of P. gelatinosum in China should be re-evaluated by more representative samples by molecular phylogeny.

CSSP(Consensus Secondary Structure Prediction): a web-based server for structural biologists

2009 ◽  
Vol 42 (2) ◽  
pp. 336-338 ◽  
Author(s):  
Ankit Gupta ◽  
Avnish Deshpande ◽  
Janardhan Kumar Amburi ◽  
Radhakrishnan Sabarinathan ◽  
Ramaswamy Senthilkumar ◽  
...  
Keyword(s):  
Secondary Structure ◽  
Structure Prediction ◽  
Secondary Structure Prediction ◽  
Three Dimensional ◽  
Web Server ◽  
Dimensional Structure ◽  
Structural Elements ◽  
Web Based ◽  
Consensus Secondary Structure ◽  
Helical Wheel

Sequence–structure correlation studies are important in deciphering the relationships between various structural aspects, which may shed light on the protein-folding problem. The first step of this process is the prediction of secondary structure for a protein sequence of unknown three-dimensional structure. To this end, a web server has been created to predict the consensus secondary structure using well known algorithms from the literature. Furthermore, the server allows users to see the occurrence of predicted secondary structural elements in other structure and sequence databases and to visualize predicted helices as a helical wheel plot. The web server is accessible at http://bioserver1.physics.iisc.ernet.in/cssp/.

scholarly journals Molecular Phylogeny of Silk Producing Insects Based on Internal Transcribed Spacer DNA1

BMB Reports ◽  
2006 ◽  
Vol 39 (5) ◽  
pp. 522-529 ◽  
Author(s):  
Botlagunta Mahendran ◽  
Sudip K. Ghosh ◽  
Subhas C. Kundu
Keyword(s):  
Molecular Phylogeny ◽  
Internal Transcribed Spacer

Pseudosperma flavorimosum sp. nov. from Pakistan

Mycotaxon ◽  
2020 ◽  
Vol 135 (1) ◽  
pp. 183-193
Author(s):  
Sana Jabeen ◽  
Abdul Nasir Khalid
Keyword(s):  
New Species ◽  
Molecular Phylogeny ◽  
Ribosomal Dna ◽  
Internal Transcribed Spacer ◽  
Morphological Characters ◽  
Nuclear Ribosomal Dna ◽  
Its Sequence ◽  
Sequence Analyses ◽  
Khyber Pakhtunkhwa Province ◽  
A New Species

Pseudosperma flavorimosum is a new species described from Khyber Pakhtunkhwa province, Pakistan. It is delimited based on morphological characters combined with a molecular phylogeny inferred from nuclear ribosomal DNA internal transcribed spacer (ITS) sequence analyses. The ITS-based phylogeny supports the independence of the new species, which is also is morphologically distinct from closely related taxa.

scholarly journals Secondary Structure of the Ribosomal Internal Transcribed Spacer (ITS) Region of Hypsizygus marmoreus

2013 ◽  
Vol 23 (10) ◽  
pp. 1260-1266
Author(s):  
Ju-Ri Woo ◽  
Hyeokjun Yoon ◽  
Young-Hyun You ◽  
Chang-Yun Lee ◽  
Won-Sik Kong ◽  
...  
Keyword(s):  
Secondary Structure ◽  
Internal Transcribed Spacer ◽  
Its Region ◽  
Hypsizygus Marmoreus
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