scholarly journals Density-Profile Processes Describing Biological Signaling Networks: Almost Sure Convergence to Deterministic Trajectories

2009 ◽  
Vol 136 (5) ◽  
pp. 875-901 ◽  
Author(s):  
Roberto Fernández ◽  
Luiz R. Fontes ◽  
E. Jordão Neves
Keyword(s):  
Density Profile ◽  
Almost Sure Convergence ◽  
Signaling Networks ◽  
Biological Signaling Networks ◽  
Deterministic Trajectories

scholarly journals Minimal intervention strategies in logical signaling networks with ASP

2013 ◽  
Vol 13 (4-5) ◽  
pp. 675-690 ◽  
Author(s):  
ROLAND KAMINSKI ◽  
TORSTEN SCHAUB ◽  
ANNE SIEGEL ◽  
SANTIAGO VIDELA
Keyword(s):  
Large Scale ◽  
Quantitative Methods ◽  
Answer Set Programming ◽  
Intervention Strategies ◽  
Signaling Networks ◽  
Fine Grained ◽  
Qualitative Approaches ◽  
Large Scale Networks ◽  
Biological Signaling Networks ◽  
Biological Outcomes

AbstractProposing relevant perturbations to biological signaling networks is central to many problems in biology and medicine because it allows for enabling or disabling certain biological outcomes. In contrast to quantitative methods that permit fine-grained (kinetic) analysis, qualitative approaches allow for addressing large-scale networks. This is accomplished by more abstract representations such as logical networks. We elaborate upon such a qualitative approach aiming at the computation of minimal interventions in logical signaling networks relying on Kleene's three-valued logic and fixpoint semantics. We address this problem within answer set programming and show that it greatly outperforms previous work using dedicated algorithms.

scholarly journals Noise Filtering and Prediction in Biological Signaling Networks

2016 ◽  
Vol 2 (1) ◽  
pp. 16-30 ◽  
Author(s):  
David Hathcock ◽  
James Sheehy ◽  
Casey Weisenberger ◽  
Efe Ilker ◽  
Michael Hinczewski
Keyword(s):  
Signaling Networks ◽  
Noise Filtering ◽  
Biological Signaling Networks

The influence of third-order interactions on the density profile of associating hard spheres

1997 ◽  
Vol 91 (4) ◽  
pp. 761-767 ◽  
Author(s):  
D. HENDERSON ◽  
S. SOKOŁOWSKI ◽  
R. ZAGORSKI ◽  
A. TROKHYMCHUK
Keyword(s):  
Density Profile ◽  
Hard Spheres ◽  
Third Order

Estimation of the electron density profile in the D region from rocket measurement of VLF signals from a ground based transmitter

1981 ◽  
Vol 64 (11) ◽  
pp. 68-74
Author(s):  
Isamu Nagano ◽  
Masayoshi Mambo ◽  
Tetsuo Fukami ◽  
Koji Namba ◽  
Iwane Kimura
Keyword(s):  
Electron Density ◽  
Density Profile ◽  
Electron Density Profile ◽  
Rocket Measurement ◽  
D Region

In utero exposure to mainstream cigarette smoke alters neonatal pulmonary signaling networks and postnatal lung function

Pneumologie ◽  
2013 ◽  
Vol 67 (12) ◽  
Author(s):  
S Dehmel ◽  
P Nathan ◽  
K Milger ◽  
R Prungnaud ◽  
R Imker ◽  
...  
Keyword(s):  
Lung Function ◽  
Cigarette Smoke ◽  
In Utero ◽  
Signaling Networks ◽  
In Utero Exposure ◽  
Mainstream Cigarette Smoke
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