Isolation and characterization of 50 SNP markers in Triplophysa siluroides

2018 ◽  
Vol 12 (1) ◽  
pp. 25-28
Author(s):  
Yeyu Chen ◽  
Quan Gong ◽  
Ya Liu ◽  
Mingjiang Song ◽  
Jun Du ◽  
...  
Keyword(s):  
Snp Markers ◽  
Isolation And Characterization

Isolation and characterization of 34 SNP markers in Hucho bleekeri

2018 ◽  
Vol 12 (2) ◽  
pp. 157-160
Author(s):  
Yeyu Chen ◽  
Huanchao Yang ◽  
Quan Gong ◽  
Yanling Chen ◽  
Quanyu Tu ◽  
...  
Keyword(s):  
Snp Markers ◽  
Isolation And Characterization ◽  
Hucho Bleekeri

scholarly journals Isolation and characterization of 89 SNP markers in the oriental turtle dove, Streptopelia orientalis

2019 ◽  
Vol 12 (2) ◽  
pp. 165-171 ◽  
Author(s):  
Jiangyong Qu ◽  
Ruxiao Wang ◽  
Shanshan Wang ◽  
Xiaoyu Guo ◽  
Yutong Cui ◽  
...  
Keyword(s):  
Snp Markers ◽  
Isolation And Characterization ◽  
Turtle Dove ◽  
Streptopelia Orientalis

Isolation and characterization of 47 SNP markers in the critically endangered Acipenser dabryanus

2018 ◽  
Vol 12 (1) ◽  
pp. 9-12
Author(s):  
Yeyu Chen ◽  
Ya Liu ◽  
Jun Du ◽  
Mingjiang Song ◽  
Jiansheng Lai ◽  
...  
Keyword(s):  
Snp Markers ◽  
Critically Endangered ◽  
Isolation And Characterization

Isolation and characterization of SNP markers for African Penguin (Spheniscus demersus)

2012 ◽  
Vol 4 (4) ◽  
pp. 1067-1069 ◽  
Author(s):  
Christiaan Labuschagne ◽  
Desiré L. Dalton ◽  
Antoinette Kotzé
Keyword(s):  
Snp Markers ◽  
Isolation And Characterization ◽  
Spheniscus Demersus ◽  
African Penguin

scholarly journals Isolation And Characterization Of 38 SNP Markers For The Black Rockfish, Sebastes Schlegelii By Next-Generation Sequencing

2021 ◽  
Author(s):  
Xianggang Gao ◽  
Xiangbo Bao ◽  
Wei Sun ◽  
Yunfeng Li ◽  
Zongying Liu ◽  
...  
Keyword(s):  
Polymorphic Information Content ◽  
Snp Markers ◽  
Habitat Destruction ◽  
Single Nucleotide ◽  
Genetic Studies ◽  
Important Species ◽  
Black Rockfish ◽  
Isolation And Characterization ◽  
Sebastes Schlegelii

Abstract The black rockfish (Sebastes schlegelii) is an economically important species. However, wild S. schlegelii resources have declined sharply in recent years as a result of human disturbance and habitat destruction. Thus, it is crucial to protect the current resources of S. schlegelii. In this study, 38 novel single nucleotide polymorphism (SNP) markers were developed based on restriction-site associated DNA sequencing. The results showed that the observed heterozygosity and expected heterozygosity ranged from 0.1400 to 0.6400 and 0.1487 to 0.4978, respectively. The minor allele frequency raged from 0.1429 to 0.4694. Polymorphic information content ranged from 0.174 to 0.365. Four SNPs were found to be deviated significantly from the HWE (P<0.05). These SNP markers will serve as a useful tool for genetic studies and population evaluation aimed at the conservation of S. schlegelii.

scholarly journals Isolation And Characterization Of 45 SNP Markers In Triplophysa Tenuis

2021 ◽  
Author(s):  
Ya Liu ◽  
Yeyu Chen ◽  
Jiansheng Lai ◽  
Hongyu Ke ◽  
Zhongmeng Zhao ◽  
...  
Keyword(s):  
Polymorphic Information Content ◽  
Snp Markers ◽  
Gansu Province ◽  
The Novel ◽  
Genetic Management ◽  
Polymorphic Snps ◽  
Isolation And Characterization ◽  
Population Conservation ◽  
Hardy Weinberg Equilibrium

Abstract Triplophysa tenuis is an endemic species to China, which mainly distributed in Xinjiang and Gansu province. Effective conservation and management of this species is limited by insufficient molecular markers. In the present study, we reported the isolation and characterization of 45 SNP markers in T. tenuis. The minor allele frequency ranged from 0.046 to 0.500, and the observed and expected heterozygosities ranged from 0.061 to 0.667 and 0.088 to 0.508, respectively. Polymorphic information content ranged from 0.083 to 0.375. Among these SNPs, three loci showed significant departures from the Hardy–Weinberg equilibrium. The novel polymorphic SNPs will be helpful for the future study on genetic management and population conservation for this species.

scholarly journals Development and Characterization of 135 SNP Markers in Chiton Acanthochitona Rubrolineatus

2021 ◽  
Author(s):  
Jirui zhang ◽  
Yunqi Song ◽  
Chenghong Wang ◽  
Shukui Zhang ◽  
Zilin Jiang ◽  
...  
Keyword(s):  
Snp Markers ◽  
Wild Populations ◽  
Effective Protection ◽  
Population Genetic Analysis ◽  
Important Species ◽  
Polymorphic Snps ◽  
Isolation And Characterization ◽  
Expected Heterozygosity ◽  
Hardy Weinberg Equilibrium

Abstract Acanthochitona rubrolineatus (Lischke, 1873) (Polyplacophora, Neoloricata, Cryptoplacidae) is an important species widely distributed in the middle and low tide zone of coastal intertidal zone along the China Sea coast. In recent years, the serious pollution of seawater has caused a sharp decline in the number of wild populations of A. rubrolineatus. Lacking of effective molecular markers limits the effective protection and management of this species. Studies for the isolation and characterization of 135 A. rubrolineatus SNPs markers were carried out. The frequency of minor allele ranges from 0.0125 to 0.5000. The observed heterozygosity and expected heterozygosity are 0.0000-0.9750, 0.0731-0.6696, respectively. The inbreeding value varies from -0.2902 to 0.9966. Among them, there are 27 sites markablely differently from Hardy-Weinberg equilibrium (P < 0.05). The study of the polymorphic SNPs will provide a therotical basis for further analysis of population genetic analysis on A. rubrolineatus.

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