The Systems Biology Graphical Notation: Current Status and Applications in Systems Medicine

2021 ◽  
pp. 372-381 ◽  
Author(s):  
Vasundra Touré ◽  
Andreas Dräger ◽  
Augustin Luna ◽  
Ugur Dogrusoz ◽  
Adrien Rougny
Molecules ◽  
2021 ◽  
Vol 26 (11) ◽  
pp. 3178
Author(s):  
Shan-Ju Yeh ◽  
Jin-Fu Lin ◽  
Bor-Sen Chen

Human skin aging is affected by various biological signaling pathways, microenvironment factors and epigenetic regulations. With the increasing demand for cosmetics and pharmaceuticals to prevent or reverse skin aging year by year, designing multiple-molecule drugs for mitigating skin aging is indispensable. In this study, we developed strategies for systems medicine design based on systems biology methods and deep neural networks. We constructed the candidate genomewide genetic and epigenetic network (GWGEN) via big database mining. After doing systems modeling and applying system identification, system order detection and principle network projection methods with real time-profile microarray data, we could obtain core signaling pathways and identify essential biomarkers based on the skin aging molecular progression mechanisms. Afterwards, we trained a deep neural network of drug–target interaction in advance and applied it to predict the potential candidate drugs based on our identified biomarkers. To narrow down the candidate drugs, we designed two filters considering drug regulation ability and drug sensitivity. With the proposed systems medicine design procedure, we not only shed the light on the skin aging molecular progression mechanisms but also suggested two multiple-molecule drugs for mitigating human skin aging from young adulthood to middle age and middle age to old age, respectively.


2009 ◽  
Vol 46 (1) ◽  
pp. S180-S190 ◽  
Author(s):  
M.R. Andersen ◽  
J. Nielsen

2018 ◽  
Vol 14 (2) ◽  
pp. e1005740 ◽  
Author(s):  
Vasundra Touré ◽  
Nicolas Le Novère ◽  
Dagmar Waltemath ◽  
Olaf Wolkenhauer

2017 ◽  
Vol 24 (12) ◽  
pp. 1226-1229 ◽  
Author(s):  
Haitham Elmarakeby ◽  
Mostafa Arefiyan ◽  
Elijah Myers ◽  
Song Li ◽  
Ruth Grene ◽  
...  

Author(s):  
Stuart Moodie ◽  
Nicolas Le Novere ◽  
Emek Demir ◽  
Huaiyu Mi ◽  
Falk Schreiber

Author(s):  
Nathan D. Price ◽  
Lucas B. Edelman ◽  
Inyoul Lee ◽  
Hyuntae Yoo ◽  
Daehee Hwang ◽  
...  

2012 ◽  
Vol 7 (3) ◽  
pp. 579-593 ◽  
Author(s):  
Astrid Junker ◽  
Hendrik Rohn ◽  
Tobias Czauderna ◽  
Christian Klukas ◽  
Anja Hartmann ◽  
...  

Author(s):  
Nicolas Le Novere ◽  
Emek Demir ◽  
Huaiyu Mi ◽  
Stuart Moodie ◽  
Alice Villeger

2020 ◽  
Vol 77 (3) ◽  
pp. 379-380
Author(s):  
Anze Zupanic ◽  
Hans C. Bernstein ◽  
Ines Heiland

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