Nuclear organization and chromatin dynamics – Sp1, Sp3 and histone deacetylases

2008 ◽  
Vol 48 (1) ◽  
pp. 189-208 ◽  
Author(s):  
James R. Davie ◽  
Shihua He ◽  
Lin Li ◽  
Anoushe Sekhavat ◽  
Paula Espino ◽  
...  
2012 ◽  
Vol 125 (21) ◽  
pp. 5241-5249 ◽  
Author(s):  
M. M. Swim ◽  
K. E. Kaeding ◽  
P. M. Ferree

2004 ◽  
Vol 12 (5) ◽  
pp. 505-516 ◽  
Author(s):  
Susan Gilchrist ◽  
Nick Gilbert ◽  
Paul Perry ◽  
Wendy A. Bickmore

Author(s):  
Benjamin Albert ◽  
Isabelle Léger-Silvestre ◽  
Christophe Normand ◽  
Olivier Gadal

2007 ◽  
Vol 6 (10) ◽  
pp. 1913-1924 ◽  
Author(s):  
Kathryn Parker ◽  
Julia Maxson ◽  
Alissa Mooney ◽  
Emily A. Wiley

ABSTRACT Class I histone deacetylases (HDACs) regulate DNA-templated processes such as transcription. They act both at specific loci and more generally across global chromatin, contributing to acetylation patterns that may underlie large-scale chromatin dynamics. Although hypoacetylation is correlated with highly condensed chromatin, little is known about the contribution of individual HDACs to chromatin condensation mechanisms. Using the ciliated protozoan Tetrahymena thermophila, we investigated the role of a specific class I HDAC, Τhd1p, in the reversible condensation of global chromatin. In this system, the normal physiological response to cell starvation includes the widespread condensation of the macronuclear chromatin and general repression of gene transcription. We show that the chromatin in Thd1p-deficient cells failed to condense during starvation. The condensation failure correlated with aberrant hyperphosphorylation of histone H1 and the overexpression of CDC2, encoding the major histone H1 kinase. Changes in the rate of acetate turnover on core histones and in the distribution of acetylated lysines 9 and 23/27 on histone H3 isoforms that were found to correlate with normal chromatin condensation were absent from Thd1p mutant cells. These results point to a role for a class I HDAC in the formation of reversible higher-order chromatin structures and global genome compaction through mechanisms involving the regulation of H1 phosphorylation and core histone acetylation/deacetylation kinetics.


2001 ◽  
Vol 7 (S2) ◽  
pp. 578-579
Author(s):  
David W. Knowles ◽  
Sophie A. Lelièvre ◽  
Carlos Ortiz de Solόrzano ◽  
Stephen J. Lockett ◽  
Mina J. Bissell ◽  
...  

The extracellular matrix (ECM) plays a critical role in directing cell behaviour and morphogenesis by regulating gene expression and nuclear organization. Using non-malignant (S1) human mammary epithelial cells (HMECs), it was previously shown that ECM-induced morphogenesis is accompanied by the redistribution of nuclear mitotic apparatus (NuMA) protein from a diffuse pattern in proliferating cells, to a multi-focal pattern as HMECs growth arrested and completed morphogenesis . A process taking 10 to 14 days.To further investigate the link between NuMA distribution and the growth stage of HMECs, we have investigated the distribution of NuMA in non-malignant S1 cells and their malignant, T4, counter-part using a novel model-based image analysis technique. This technique, based on a multi-scale Gaussian blur analysis (Figure 1), quantifies the size of punctate features in an image. Cells were cultured in the presence and absence of a reconstituted basement membrane (rBM) and imaged in 3D using confocal microscopy, for fluorescently labeled monoclonal antibodies to NuMA (fαNuMA) and fluorescently labeled total DNA.


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