scholarly journals High-dimensional structure learning of binary pairwise Markov networks: A comparative numerical study

2020 ◽  
Vol 141 ◽  
pp. 62-76 ◽  
Author(s):  
Johan Pensar ◽  
Yingying Xu ◽  
Santeri Puranen ◽  
Maiju Pesonen ◽  
Yoshiyuki Kabashima ◽  
...  
2018 ◽  
Vol 37 (3) ◽  
pp. 241-251 ◽  
Author(s):  
J. J. Thiagarajan ◽  
S. Liu ◽  
K. N. Ramamurthy ◽  
P.-T. Bremer

2017 ◽  
Vol 2017 ◽  
pp. 1-9 ◽  
Author(s):  
Binbin Zhang ◽  
Weiwei Wang ◽  
Xiangchu Feng

Subspace clustering aims to group a set of data from a union of subspaces into the subspace from which it was drawn. It has become a popular method for recovering the low-dimensional structure underlying high-dimensional dataset. The state-of-the-art methods construct an affinity matrix based on the self-representation of the dataset and then use a spectral clustering method to obtain the final clustering result. These methods show that sparsity and grouping effect of the affinity matrix are important in recovering the low-dimensional structure. In this work, we propose a weighted sparse penalty and a weighted grouping effect penalty in modeling the self-representation of data points. The experimental results on Extended Yale B, USPS, and Berkeley 500 image segmentation datasets show that the proposed model is more effective than state-of-the-art methods in revealing the subspace structure underlying high-dimensional dataset.


2017 ◽  
Vol 13 (1) ◽  
Author(s):  
Dandan Jiang ◽  
Jianguo Sun

AbstractStatistical analysis of high-dimensional data has been attracting more and more attention due to the abundance of such data in various fields such as genetic studies or genomics and the existence of many interesting topics. Among them, one is the identification of a gene or genes that have significant effects on the occurrence of or are significantly related to a certain disease. In this paper, we will discuss such a problem that can be formulated as a group test or testing a group of variables or coefficients when one faces right-censored failure time response variable. For the problem, we develop a corrected variance reduced partial profiling (CVRPP) linear regression model and a likelihood ratio test procedure when the failure time of interest follows the additive hazards model. The numerical study suggests that the proposed method works well in practical situations and gives better performance than the existing one. An illustrative example is provided.


2017 ◽  
Vol 44 (1) ◽  
pp. 265-286 ◽  
Author(s):  
Song Liu ◽  
Kenji Fukumizu ◽  
Taiji Suzuki

2012 ◽  
Vol 1 (33) ◽  
pp. 38
Author(s):  
Andrea Ruju ◽  
Pablo Higuera ◽  
Javier L. Lara ◽  
Inigo J. Losada ◽  
Giovanni Coco

This work presents the numerical study of rip current circulation on a barred beach. The numerical simulations have been carried out with the IH-FOAM model which is based on the three dimensional Reynolds Averaged Navier-Stokes equations. The new boundary conditions implemented in IH-FOAM have been used, including three dimensional wave generation as well as active wave absorption at the boundary. Applying the specific wave generation boundary conditions, the model is validated to simulate rip circulation on a barred beach. Moreover, this study addresses the identification of the forcing mechanisms and the three dimensional structure of the mean flow.


2019 ◽  
Author(s):  
Richard Scalzo ◽  
David Kohn ◽  
Hugo Olierook ◽  
Gregory Houseman ◽  
Rohitash Chandra ◽  
...  

Abstract. The rigorous quantification of uncertainty in geophysical inversions is a challenging problem. Inversions are often ill-posed and the likelihood surface may be multimodal; properties of any single mode become inadequate uncertainty measures, and sampling methods become inefficient for irregular posteriors or high-dimensional parameter spaces. We explore the influences of different choices made by the practitioner on the efficiency and accuracy of Bayesian geophysical inversion methods that rely on Markov chain Monte Carlo sampling to assess uncertainty, using a multi-sensor inversion of the three-dimensional structure and composition of a region in the Cooper Basin of South Australia as a case study. The inversion is performed using an updated version of the Obsidian distributed inversion software. We find that the posterior for this inversion has complex local covariance structure, hindering the efficiency of adaptive sampling methods that adjust the proposal based on the chain history. Within the context of a parallel-tempered Markov chain Monte Carlo scheme for exploring high-dimensional multi-modal posteriors, a preconditioned Crank-Nicholson proposal outperforms more conventional forms of random walk. Aspects of the problem setup, such as priors on petrophysics or on 3-D geological structure, affect the shape and separation of posterior modes, influencing sampling performance as well as the inversion results. Use of uninformative priors on sensor noise can improve inversion results by enabling optimal weighting among multiple sensors even if noise levels are uncertain. Efficiency could be further increased by using posterior gradient information within proposals, which Obsidian does not currently support, but which could be emulated using posterior surrogates.


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