scholarly journals Estimating the reproductive number, total outbreak size, and reporting rates for Zika epidemics in South and Central America

Epidemics ◽  
2017 ◽  
Vol 21 ◽  
pp. 63-79 ◽  
Author(s):  
Deborah P. Shutt ◽  
Carrie A. Manore ◽  
Stephen Pankavich ◽  
Aaron T. Porter ◽  
Sara Y. Del Valle
Author(s):  
Mayra R. Tocto-Erazo ◽  
Daniel Olmos-Liceaga ◽  
José A. Montoya-Laos

Human movement is a key factor in infectious diseases spread such as dengue. Here, we explore a mathematical modeling approach based on a system of ordinary differential equations to study the effect of human movement on characteristics of dengue dynamics such as the existence of endemic equilibria, and the start, duration, and amplitude of the outbreak. The model considers that every day is divided into two periods: high-activity and low-activity. Periodic human movement between patches occurs in discrete times. Based on numerical simulations, we show unexpected scenarios such as the disease extinction in regions where the local basic reproductive number is greater than 1. In the same way, we obtain scenarios where outbreaks appear despite the fact that the local basic reproductive numbers in these regions are less than 1 and the outbreak size depends on the length of high-activity and low-activity periods.


Author(s):  
Laurent Hébert-Dufresne ◽  
Benjamin M. Althouse ◽  
Samuel V. Scarpino ◽  
Antoine Allard

The basic reproductive number — R0 — is one of the most common and most commonly misapplied numbers in public health. Although often used to compare outbreaks and forecast pandemic risk, this single number belies the complexity that two different pathogens can exhibit, even when they have the same R0 [1–3]. Here, we show how to predict outbreak size using estimates of the distribution of secondary infections, leveraging both its average R0 and the underlying heterogeneity. To do so, we reformulate and extend a classic result from random network theory [4] that relies on contact tracing data to simultaneously determine the first moment (R0) and the higher moments (representing the heterogeneity) in the distribution of secondary infections. Further, we show the different ways in which this framework can be implemented in the data-scarce reality of emerging pathogens. Lastly, we demonstrate that without data on the heterogeneity in secondary infections for emerging infectious diseases like COVID-19, the uncertainty in outbreak size ranges dramatically. Taken together, our work highlights the critical need for contact tracing during emerging infectious disease outbreaks and the need to look beyond R0 when predicting epidemic size.


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