scholarly journals Bioelectrochemical analysis of thermodynamics of the catalytic cycle and kinetics of the oxidative inactivation of oxygen-tolerant [NiFe]-hydrogenase

2016 ◽  
Vol 766 ◽  
pp. 152-161 ◽  
Author(s):  
Keisei So ◽  
Rui Hamamoto ◽  
Ryosuke Takeuchi ◽  
Yuki Kitazumi ◽  
Osamu Shirai ◽  
...  
2015 ◽  
Vol 6 (7) ◽  
pp. 1103-1117 ◽  
Author(s):  
D. J. Darensbourg ◽  
A. D. Yeung

The catalytic cycle of the (salen)M(iii)-catalyzed copolymerization for a variety of epoxides with CO2 is elucidated using computational chemistry, and factors that control the kinetics and product distribution of these reactions are described.


2003 ◽  
Vol 278 (41) ◽  
pp. 39662-39668 ◽  
Author(s):  
Joseph P. Emerson ◽  
Eric D. Coulter ◽  
Robert S. Phillips ◽  
Donald M. Kurtz

2016 ◽  
Vol 121 (22) ◽  
pp. 13,768-13,783 ◽  
Author(s):  
Timothy P. Canty ◽  
Ross J. Salawitch ◽  
David M. Wilmouth
Keyword(s):  

2013 ◽  
Vol 288 (49) ◽  
pp. 35210-35221 ◽  
Author(s):  
Jeerus Sucharitakul ◽  
Chanakan Tongsook ◽  
Danaya Pakotiprapha ◽  
Willem J. H. van Berkel ◽  
Pimchai Chaiyen

Life ◽  
2019 ◽  
Vol 9 (2) ◽  
pp. 42 ◽  
Author(s):  
Ekaterina V. Skorb ◽  
Sergey N. Semenov

Network autocatalysis, which is autocatalysis whereby a catalyst is not directly produced in a catalytic cycle, is likely to be more common in chemistry than direct autocatalysis is. Nevertheless, the kinetics of autocatalytic networks often does not exactly follow simple quadratic or cubic rate laws and largely depends on the structure of the network. In this article, we analyzed one of the simplest and most chemically plausible autocatalytic networks where a catalytic cycle is coupled to an ancillary reaction that produces the catalyst. We analytically analyzed deviations in the kinetics of this network from its exponential growth and numerically studied the competition between two networks for common substrates. Our results showed that when quasi-steady-state approximation is applicable for at least one of the components, the deviation from the exponential growth is small. Numerical simulations showed that competition between networks results in the mutual exclusion of autocatalysts; however, the presence of a substantial noncatalytic conversion of substrates will create broad regions where autocatalysts can coexist. Thus, we should avoid the accumulation of intermediates and the noncatalytic conversion of the substrate when designing experimental systems that need autocatalysis as a source of positive feedback or as a source of evolutionary pressure.


2018 ◽  
Author(s):  
Mohamad-Javad Vaseghi ◽  
Kamel Chibani ◽  
Wilena Telman ◽  
Michael Liebthal ◽  
Melanie Gerken ◽  
...  

AbstractThiol-dependent redox regulation controls central processes in plant cells including photosynthesis. Thioredoxins reductively activate e.g. Calvin-Benson cycle enzymes. However the mechanism of oxidative inactivation is unknown despite its importance for efficient regulation. Here, the abundant 2-cysteine peroxiredoxin (2-CysPrx), but not its site-directed variants, mediates rapid inactivation of reductively activated fructose-1,6-bisphosphatase and NADPH-dependent malate dehydrogenase (MDH) in the presence of the proper thioredoxins. Deactivation of phosphoribulokinase and MDH was compromised in 2cysprxAB mutants plants upon light/dark transition compared to wildtype. The decisive role of 2cysprxAB in regulating photosynthesis was evident from reoxidation kinetics of ferredoxin upon darkening of intact leaves since its half time decreased 3.5-times in 2cysprxAB. The disadvantage of inefficient deactivation turned into an advantage in fluctuating light. The results show that the 2-CysPrx serves as electron sink in the thiol network important to oxidize reductively activated proteins and represents the missing link in the reversal of thioredoxin-dependent regulation.


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