Graphical representation of proteins as four-color maps and their numerical characterization

2009 ◽  
Vol 27 (5) ◽  
pp. 637-641 ◽  
Author(s):  
Milan Randić ◽  
Ketij Mehulić ◽  
Damir Vukičević ◽  
Tomaž Pisanski ◽  
Dražen Vikić-Topić ◽  
...  
Keyword(s):  
Graphical Representation ◽  
Numerical Characterization ◽  
Graphical Representation Of Proteins

scholarly journals Novel Graphical Representation and Numerical Characterization of DNA Sequences

2016 ◽  
Vol 6 (3) ◽  
pp. 63 ◽  
Author(s):  
Chun Li ◽  
Wenchao Fei ◽  
Yan Zhao ◽  
Xiaoqing Yu
Keyword(s):  
Dna Sequences ◽  
Graphical Representation ◽  
Numerical Characterization

Novel 2-D graphical representation of DNA sequences and their numerical characterization

2003 ◽  
Vol 368 (1-2) ◽  
pp. 1-6 ◽  
Author(s):  
Milan Randić ◽  
Marjan Vračko ◽  
Nella Lerš ◽  
Dejan Plavšić
Keyword(s):  
Dna Sequences ◽  
Graphical Representation ◽  
Numerical Characterization

Graphical Representation of Proteins†

2011 ◽  
Vol 111 (2) ◽  
pp. 790-862 ◽  
Author(s):  
Milan Randić ◽  
Jure Zupan ◽  
Alexandru T. Balaban ◽  
Dražen Vikić-Topić ◽  
Dejan Plavšić
Keyword(s):  
Graphical Representation ◽  
Graphical Representation Of Proteins

A novel graphical representation of proteins and its application

2012 ◽  
Vol 391 (1-2) ◽  
pp. 93-99 ◽  
Author(s):  
Ping-an He ◽  
Jinzhou Wei ◽  
Yuhua Yao ◽  
Zhixin Tie
Keyword(s):  
Graphical Representation ◽  
Graphical Representation Of Proteins

ANALYSIS OF SIMILARITY/DISSIMILARITY OF DNA SEQUENCES BY A NEW 3D GRAPHICAL REPRESENTATION

2007 ◽  
Vol 15 (03) ◽  
pp. 287-297 ◽  
Author(s):  
JIE SONG
Keyword(s):  
Dna Sequences ◽  
Chemical Structure ◽  
Graphical Representation ◽  
Globin Gene ◽  
Coding Sequences ◽  
Chemical Structures ◽  
Numerical Characterization ◽  
Analysis Of Similarity ◽  
3D Graphical Representation ◽  
3D Representations

A new 3D graphical representation of DNA sequences according to chemical structures of the bases is proposed, reflecting the distribution of bases with different chemical structure, preserving information on sequential adjacency of bases, avoiding loss of information accompanying alternative 3D representations in which the curve standing for DNA overlaps and intersects itself. Based on this representation, a numerical characterization approach is presented by constructing a six-component vector whose components are the normalized leading eigenvalues of the L/L matrices associated with the DNA sequences. The examination of similarities among the coding sequences of the first exon of β-globin gene of different species illustrates the utility of the approach.

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