Predict protein structural class by incorporating two different modes of evolutionary information into Chou's general pseudo amino acid composition

Journal of Molecular Graphics and Modelling ◽

10.1016/j.jmgm.2017.10.003 ◽

2017 ◽

Vol 78 ◽

pp. 110-117 ◽

Author(s):

Yunyun Liang ◽

Shengli Zhang

Keyword(s):

Amino Acid Composition ◽

Acid Composition ◽

Evolutionary Information ◽

Pseudo Amino Acid Composition ◽

Structural Class ◽

Protein Structural Class

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Prediction of protein structural class for low-similarity sequences using Chou’s pseudo amino acid composition and wavelet denoising

Journal of Molecular Graphics and Modelling ◽

10.1016/j.jmgm.2017.07.012 ◽

2017 ◽

Vol 76 ◽

pp. 260-273 ◽

Author(s):

Bin Yu ◽

Lifeng Lou ◽

Shan Li ◽

Yusen Zhang ◽

Wenying Qiu ◽

...

Keyword(s):

Amino Acid Composition ◽

Acid Composition ◽

Wavelet Denoising ◽

Pseudo Amino Acid Composition ◽

Structural Class ◽

Protein Structural Class

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Using pseudo amino acid composition to predict protein structural class: Approached by incorporating 400 dipeptide components

Journal of Computational Chemistry ◽

10.1002/jcc.20554 ◽

2007 ◽

Vol 28 (9) ◽

pp. 1463-1466 ◽

Author(s):

Hao Lin ◽

Qian-Zhong Li

Keyword(s):

Amino Acid Composition ◽

Acid Composition ◽

Pseudo Amino Acid Composition ◽

Structural Class ◽

Protein Structural Class

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Using pseudo-amino acid composition and support vector machine to predict protein structural class

Journal of Theoretical Biology ◽

10.1016/j.jtbi.2006.06.025 ◽

2006 ◽

Vol 243 (3) ◽

pp. 444-448 ◽

Author(s):

Chao Chen ◽

Yuan-Xin Tian ◽

Xiao-Yong Zou ◽

Pei-Xiang Cai ◽

Jin-Yuan Mo

Keyword(s):

Support Vector Machine ◽

Amino Acid Composition ◽

Acid Composition ◽

Support Vector ◽

Pseudo Amino Acid Composition ◽

Structural Class ◽

Protein Structural Class

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Predicting protein structural class with pseudo-amino acid composition and support vector machine fusion network

Analytical Biochemistry ◽

10.1016/j.ab.2006.07.022 ◽

2006 ◽

Vol 357 (1) ◽

pp. 116-121 ◽

Author(s):

Chao Chen ◽

Xibin Zhou ◽

Yuanxin Tian ◽

Xiaoyong Zou ◽

Peixiang Cai

Keyword(s):

Support Vector Machine ◽

Amino Acid Composition ◽

Acid Composition ◽

Support Vector ◽

Pseudo Amino Acid Composition ◽

Structural Class ◽

Protein Structural Class

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A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction

Computational Biology and Chemistry ◽

10.1016/j.compbiolchem.2010.09.002 ◽

2010 ◽

Vol 34 (5-6) ◽

pp. 320-327 ◽

Author(s):

Sitanshu Sekhar Sahu ◽

Ganapati Panda

Keyword(s):

Amino Acid Composition ◽

Acid Composition ◽

Feature Representation ◽

Pseudo Amino Acid Composition ◽

Class Prediction ◽

Structural Class ◽

Protein Structural Class ◽

Representation Method

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Predict protein structural class for low-similarity sequences by evolutionary difference information into the general form of Chou׳s pseudo amino acid composition

Journal of Theoretical Biology ◽

10.1016/j.jtbi.2014.04.008 ◽

2014 ◽

Vol 355 ◽

pp. 105-110 ◽

Author(s):

Lichao Zhang ◽

Xiqiang Zhao ◽

Liang Kong

Keyword(s):

Amino Acid Composition ◽

Acid Composition ◽

Pseudo Amino Acid Composition ◽

Structural Class ◽

Protein Structural Class

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Dual-Layer Wavelet SVM for Predicting Protein Structural Class Via the General Form of Chou’s Pseudo Amino Acid Composition

Protein and Peptide Letters ◽

10.2174/092986612799789332 ◽

2012 ◽

Vol 19 (4) ◽

pp. 422-429 ◽

Author(s):

Chao Chen ◽

Zhi-Bin Shen ◽

Xiao-Yong Zou

Keyword(s):

Amino Acid Composition ◽

Acid Composition ◽

Pseudo Amino Acid Composition ◽

Structural Class ◽

Protein Structural Class

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Identifying Bacterial Virulent Proteins by Fusing a Set of Classifiers Based on Variants of Chou's Pseudo Amino Acid Composition and on Evolutionary Information

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2011.117 ◽

2012 ◽

Vol 9 (2) ◽

pp. 467-475 ◽

Author(s):

Loris Nanni ◽

Alessandra Lumini ◽

Dinesh Gupta ◽

Aarti Garg

Keyword(s):

Amino Acid Composition ◽

Acid Composition ◽

Evolutionary Information ◽

Pseudo Amino Acid Composition

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Discriminating bioluminescent proteins by incorporating average chemical shift and evolutionary information into the general form of Chou's pseudo amino acid composition

Journal of Theoretical Biology ◽

10.1016/j.jtbi.2013.06.003 ◽

2013 ◽

Vol 334 ◽

pp. 45-51 ◽

Author(s):

Guo-Liang Fan ◽

Qian-Zhong Li

Keyword(s):

Chemical Shift ◽

Amino Acid Composition ◽

Acid Composition ◽

Evolutionary Information ◽

Pseudo Amino Acid Composition

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A weighting method for predicting protein structural class from amino acid composition

European Journal of Biochemistry ◽

10.1111/j.1432-1033.1992.tb17476.x ◽

1992 ◽

Vol 210 (3) ◽

pp. 747-749 ◽

Author(s):

Zhou GENFA ◽

Xu XINHUA ◽

Zhang CHUN-TING

Keyword(s):

Amino Acid Composition ◽

Acid Composition ◽

Weighting Method ◽

Structural Class ◽

Protein Structural Class

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