Using pseudo-amino acid composition and support vector machine to predict protein structural class

Journal of Theoretical Biology ◽

10.1016/j.jtbi.2006.06.025 ◽

2006 ◽

Vol 243 (3) ◽

pp. 444-448 ◽

Author(s):

Chao Chen ◽

Yuan-Xin Tian ◽

Xiao-Yong Zou ◽

Pei-Xiang Cai ◽

Jin-Yuan Mo

Keyword(s):

Support Vector Machine ◽

Amino Acid Composition ◽

Acid Composition ◽

Support Vector ◽

Pseudo Amino Acid Composition ◽

Structural Class ◽

Protein Structural Class

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Predicting protein structural class with pseudo-amino acid composition and support vector machine fusion network

Analytical Biochemistry ◽

10.1016/j.ab.2006.07.022 ◽

2006 ◽

Vol 357 (1) ◽

pp. 116-121 ◽

Author(s):

Chao Chen ◽

Xibin Zhou ◽

Yuanxin Tian ◽

Xiaoyong Zou ◽

Peixiang Cai

Keyword(s):

Support Vector Machine ◽

Amino Acid Composition ◽

Acid Composition ◽

Support Vector ◽

Pseudo Amino Acid Composition ◽

Structural Class ◽

Protein Structural Class

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Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes

Journal of Theoretical Biology ◽

10.1016/j.jtbi.2007.06.001 ◽

2007 ◽

Vol 248 (3) ◽

pp. 546-551 ◽

Author(s):

Xi-Bin Zhou ◽

Chao Chen ◽

Zhan-Chao Li ◽

Xiao-Yong Zou

Keyword(s):

Support Vector Machine ◽

Amino Acid Composition ◽

Acid Composition ◽

Support Vector ◽

Pseudo Amino Acid Composition

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Prediction of β-lactamase and its class by Chou’s pseudo-amino acid composition and support vector machine

Journal of Theoretical Biology ◽

10.1016/j.jtbi.2014.10.008 ◽

2015 ◽

Vol 365 ◽

pp. 96-103 ◽

Author(s):

Ravindra Kumar ◽

Abhishikha Srivastava ◽

Bandana Kumari ◽

Manish Kumar

Keyword(s):

Support Vector Machine ◽

Amino Acid Composition ◽

Acid Composition ◽

Support Vector ◽

Pseudo Amino Acid Composition

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Prediction of protein structural class for low-similarity sequences using Chou’s pseudo amino acid composition and wavelet denoising

Journal of Molecular Graphics and Modelling ◽

10.1016/j.jmgm.2017.07.012 ◽

2017 ◽

Vol 76 ◽

pp. 260-273 ◽

Author(s):

Bin Yu ◽

Lifeng Lou ◽

Shan Li ◽

Yusen Zhang ◽

Wenying Qiu ◽

...

Keyword(s):

Amino Acid Composition ◽

Acid Composition ◽

Wavelet Denoising ◽

Pseudo Amino Acid Composition ◽

Structural Class ◽

Protein Structural Class

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Prediction of Protein Secondary Structure Content by Using the Concept of Chou’s Pseudo Amino Acid Composition and Support Vector Machine

Frontiers in Protein and Peptide Sciences ◽

10.2174/9781608058624114010010 ◽

2014 ◽

pp. 161-173

Keyword(s):

Support Vector Machine ◽

Secondary Structure ◽

Amino Acid Composition ◽

Acid Composition ◽

Protein Secondary Structure ◽

Support Vector ◽

Pseudo Amino Acid Composition ◽

Secondary Structure Content

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Using pseudo amino acid composition to predict protein structural class: Approached by incorporating 400 dipeptide components

Journal of Computational Chemistry ◽

10.1002/jcc.20554 ◽

2007 ◽

Vol 28 (9) ◽

pp. 1463-1466 ◽

Author(s):

Hao Lin ◽

Qian-Zhong Li

Keyword(s):

Amino Acid Composition ◽

Acid Composition ◽

Pseudo Amino Acid Composition ◽

Structural Class ◽

Protein Structural Class

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Using the Concept of Chous Pseudo Amino Acid Composition to Predict Enzyme Family Classes: An Approach with Support Vector Machine Based on Discrete Wavelet Transform

Protein and Peptide Letters ◽

10.2174/092986610791190372 ◽

2010 ◽

Vol 17 (6) ◽

pp. 715-722 ◽

Author(s):

Jian-Ding Qiu ◽

Jian-Hua Huang ◽

Shao-Ping Shi ◽

Ru-Ping Liang

Keyword(s):

Support Vector Machine ◽

Wavelet Transform ◽

Discrete Wavelet Transform ◽

Amino Acid Composition ◽

Acid Composition ◽

Support Vector ◽

Discrete Wavelet ◽

Pseudo Amino Acid Composition ◽

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Re: PrESOgenesis: A Two-Layer Multi-Label Predictor for Identifying Fertility-Related Proteins Using Support Vector Machine and Pseudo Amino Acid Composition Approach

The Journal of Urology ◽

10.1097/01.ju.0000550211.54030.fd ◽

2019 ◽

Vol 201 (1) ◽

pp. 34-34

Author(s):

Anthony Atala

Keyword(s):

Support Vector Machine ◽

Amino Acid Composition ◽

Acid Composition ◽

Support Vector ◽

Pseudo Amino Acid Composition ◽

Related Proteins

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Prediction of Protein Structure Classes with Pseudo Amino Acid Composition and Fuzzy Support Vector Machine Network

Protein and Peptide Letters ◽

10.2174/092986607781483778 ◽

2007 ◽

Vol 14 (8) ◽

pp. 811-815 ◽

Author(s):

Yong-Sheng Ding ◽

Tong-Liang Zhang ◽

Kuo-Chen Chou

Keyword(s):

Support Vector Machine ◽

Protein Structure ◽

Amino Acid Composition ◽

Acid Composition ◽

Support Vector ◽

Pseudo Amino Acid Composition ◽

Fuzzy Support Vector Machine ◽

Support Vector Machine Network

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A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction

Computational Biology and Chemistry ◽

10.1016/j.compbiolchem.2010.09.002 ◽

2010 ◽

Vol 34 (5-6) ◽

pp. 320-327 ◽

Author(s):

Sitanshu Sekhar Sahu ◽

Ganapati Panda

Keyword(s):

Amino Acid Composition ◽

Acid Composition ◽

Feature Representation ◽

Pseudo Amino Acid Composition ◽

Class Prediction ◽

Structural Class ◽

Protein Structural Class ◽

Representation Method

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