The effect of calcium binding on the unfolding force of mutated and healthy titin I10 domain: A steered molecular dynamics simulation study

Journal of Molecular Graphics and Modelling ◽

10.1016/j.jmgm.2020.107534 ◽

2020 ◽

Vol 96 ◽

pp. 107534

Author(s):

Mohadese Abidi ◽

Reza Soheilifard

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Simulation Study ◽

Calcium Binding ◽

Steered Molecular Dynamics ◽

Dynamics Simulation ◽

Steered Molecular Dynamics Simulation

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Steered Molecular Dynamics Simulation Study of Quantified Effects of Point Mutation Induced by Breast Cancer on Mechanical Behavior of E-Cadherin

Molecular Biology ◽

10.1134/s0026893318050047 ◽

2018 ◽

Vol 52 (5) ◽

pp. 723-731 ◽

Author(s):

Sh. Azadi ◽

M. Tafazzoli-Shadpour ◽

R. Omidvar

Keyword(s):

Breast Cancer ◽

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Mechanical Behavior ◽

Point Mutation ◽

Simulation Study ◽

Steered Molecular Dynamics ◽

Dynamics Simulation ◽

Steered Molecular Dynamics Simulation ◽

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Force-induced unfolding of human telomeric G-quadruplex: A steered molecular dynamics simulation study

Biochemical and Biophysical Research Communications ◽

10.1016/j.bbrc.2008.12.006 ◽

2009 ◽

Vol 379 (1) ◽

pp. 70-75 ◽

Author(s):

Hui Li ◽

En-hua Cao ◽

Thomas Gisler

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Simulation Study ◽

Steered Molecular Dynamics ◽

Dynamics Simulation ◽

Steered Molecular Dynamics Simulation ◽

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The Ca2+ Influence on Calmodulin Unfolding Pathway: A Steered Molecular Dynamics Simulation Study

PLoS ONE ◽

10.1371/journal.pone.0049013 ◽

2012 ◽

Vol 7 (11) ◽

pp. e49013 ◽

Author(s):

Yong Zhang ◽

Jizhong Lou

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Simulation Study ◽

Steered Molecular Dynamics ◽

Dynamics Simulation ◽

Steered Molecular Dynamics Simulation

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Steered molecular dynamics simulation study on dynamic self-assembly of single-stranded DNA with double-walled carbon nanotube and graphene

Nanoscale ◽

10.1039/c2nr12112c ◽

2012 ◽

Vol 4 (7) ◽

pp. 2301 ◽

Author(s):

Chang-Li Cheng ◽

Guang-Jiu Zhao

Keyword(s):

Molecular Dynamics ◽

Carbon Nanotube ◽

Molecular Dynamics Simulation ◽

Simulation Study ◽

Self Assembly ◽

Steered Molecular Dynamics ◽

Dynamics Simulation ◽

Single Stranded Dna ◽

Steered Molecular Dynamics Simulation

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Effect of Sequence Variation on the Mechanical Response of Amyloid Fibrils Probed by Steered Molecular Dynamics Simulation

Biophysical Journal ◽

10.1016/j.bpj.2011.12.047 ◽

2012 ◽

Vol 102 (3) ◽

pp. 587-596 ◽

Author(s):

Hlengisizwe Ndlovu ◽

Alison E. Ashcroft ◽

Sheena E. Radford ◽

Sarah A. Harris

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Sequence Variation ◽

Amyloid Fibrils ◽

Mechanical Response ◽

Steered Molecular Dynamics ◽

Dynamics Simulation ◽

Steered Molecular Dynamics Simulation

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Effect of mutation at the interface of Trp-repressor dimeric protein: a steered molecular dynamics simulation

European Biophysics Journal ◽

10.1007/s00249-013-0918-9 ◽

2013 ◽

Vol 42 (9) ◽

pp. 683-690 ◽

Author(s):

German Miño ◽

Mauricio Baez ◽

Gonzalo Gutierrez

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Protein A ◽

Steered Molecular Dynamics ◽

Dynamics Simulation ◽

Trp Repressor ◽

Steered Molecular Dynamics Simulation ◽

Dimeric Protein

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Exploring stereochemical specificity of phosphotriesterase by MM-PBSA and MM-GBSA calculation and steered molecular dynamics simulation

Journal of Biomolecular Structure and Dynamics ◽

10.1080/07391102.2016.1244494 ◽

2016 ◽

Vol 35 (14) ◽

pp. 3140-3151 ◽

Author(s):

Jingxuan Zhu ◽

Xin Li ◽

Siqi Zhang ◽

Hen Ye ◽

Hui Zhao ◽

...

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Steered Molecular Dynamics ◽

Dynamics Simulation ◽

Steered Molecular Dynamics Simulation

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Dynamic Mechanism of E2020 Binding to Acetylcholinesterase: A Steered Molecular Dynamics Simulation

The Journal of Physical Chemistry B ◽

10.1021/jp0552877 ◽

2005 ◽

Vol 109 (49) ◽

pp. 23730-23738 ◽

Author(s):

Chunying Niu ◽

Yechun Xu ◽

Yong Xu ◽

Xiaomin Luo ◽

Wenhu Duan ◽

...

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Steered Molecular Dynamics ◽

Dynamic Mechanism ◽

Dynamics Simulation ◽

Steered Molecular Dynamics Simulation

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Analysis of the Interaction between a Protein and Polymer Membranes Using Steered Molecular Dynamics Simulation to Interpret the Fouling Behavior

Bulletin of the Chemical Society of Japan ◽

10.1246/bcsj.20200173 ◽

2020 ◽

Vol 93 (12) ◽

pp. 1443-1448

Author(s):

Shunsuke Mieda

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Polymer Membranes ◽

Steered Molecular Dynamics ◽

Dynamics Simulation ◽

Steered Molecular Dynamics Simulation

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Study on the binding mode of the integrase with DNA via steered molecular dynamics simulation

2009 Annual International Conference of the IEEE Engineering in Medicine and Biology Society ◽

10.1109/iembs.2009.5332821 ◽

2009 ◽

Author(s):

Cun Xin Wang ◽

Ming Liu ◽

Ping Li ◽

Xiao Jing Cong ◽

Jian Jun Tan ◽

...

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Binding Mode ◽

Steered Molecular Dynamics ◽

Dynamics Simulation ◽

Steered Molecular Dynamics Simulation

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