DMD exon 2 duplication due to a complex genomic rearrangement is associated with a somatic mosaicism

Author(s):  
Akatsuki Kubota ◽  
Hiroyuki Ishiura ◽  
Kristine Joyce Linay Porto ◽  
Masaki Tanaka ◽  
Jun Mitsui ◽  
...  
PLoS Genetics ◽  
2011 ◽  
Vol 7 (12) ◽  
pp. e1002412 ◽  
Author(s):  
Ben Dorshorst ◽  
Anna-Maja Molin ◽  
Carl-Johan Rubin ◽  
Anna M. Johansson ◽  
Lina Strömstedt ◽  
...  

2017 ◽  
Vol 32 (12) ◽  
pp. 1792-1794 ◽  
Author(s):  
Berivan Baskin ◽  
Lorraine V. Kalia ◽  
Brenda L. Banwell ◽  
Peter N. Ray ◽  
Grace Yoon

2021 ◽  
Author(s):  
Luigia Cinque ◽  
Lucia Micale ◽  
Elena Manara ◽  
Andrea Esposito ◽  
Orazio Palumbo ◽  
...  

1990 ◽  
Vol 63 (01) ◽  
pp. 024-026 ◽  
Author(s):  
N S Wang ◽  
M Zhang ◽  
A R Thompson ◽  
S-H Chen

SummaryA Chinese patient with sporadic, severe hemophilia B was found to have a low level of total factor IX antigen (3.5 U/dl), but less apparent antigen in an assay using a calcium-dependent antibody fraction (1.1 U/dl). This suggested a defect in the factor IX Gla domain coded mainly by exon 2 of the factor IX gene. Exon 2 was therefore amplified and sequenced. An A to T substitution was found at nucleotide 6455 of the patient’s factor IX gene. This transversion changes the codon for Glu 27 in normal factor IX to a codon for Val. Since Glu 27 becomes an essential Gla residue, the defect should result in altered calcium-binding or calcium-dependent conformation of the patient’s factor IX. The introduction of a hydrophobic side chain also appears to affect the hemophilic protein’s stability.In leukocyte DNA from the patient’s mother, the nucleotide sequence of exon 2 was entirely normal. Thus, barring somatic mosaicism within her germ cells, the new mutation occurred in oogenesis of her ovary.


2016 ◽  
Vol 101 (7) ◽  
pp. 2623-2627 ◽  
Author(s):  
Akie Nakamura ◽  
Erika Hamaguchi ◽  
Reiko Horikawa ◽  
Yasuyuki Nishimura ◽  
Keiko Matsubara ◽  
...  

genesis ◽  
2007 ◽  
Vol 45 (2) ◽  
pp. 76-82 ◽  
Author(s):  
Dina Myers Stroud ◽  
Bruce J. Darrow ◽  
Sang Do Kim ◽  
Jie Zhang ◽  
Monique R.M. Jongbloed ◽  
...  

2012 ◽  
Vol 158A (7) ◽  
pp. 1529-1534 ◽  
Author(s):  
Maki Fukami ◽  
Takayoshi Tsuchiya ◽  
Shuji Takada ◽  
Akiko Kanbara ◽  
Hiroshi Asahara ◽  
...  

2014 ◽  
Vol 112 (08) ◽  
pp. 264-270 ◽  
Author(s):  
Guoling You ◽  
Kun Chi ◽  
Yeling Lu ◽  
Qiulan Ding ◽  
Jing Dai ◽  
...  

SummaryIntron 1 inversion (Inv1) is a recurrent causative mutation of haemophilia A (HA) and is responsible for 1–5% of severe HA. Inv1 occurs as a result of intra-chromosomal homologous recombination between int1h-1 within intron 1 and int1h-2 located in approximately 125 kb telomeric to the F8 gene. In this report, we presented a previously undescribed aberrant type of Inv1 with complex genomic rearrangement in a pedigree with severe HA. The breakpoints of the rearrangement were identified by the genome walking technique; copy number variations (CNVs) of the F8 gene and X chromosome were detected by AccuCopy technique, Affymetrix CytoScan HD CNV assay and quantitative PCR (qPCR); the F8 transcripts related to the aberrant Inv1 were analysed by reverse transcription PCR (RT-PCR). We have characterised the exact breakpoints of the complex rearrangement, and determined the location and size of the insertion and deletion. The rearrangements can be summarised as an aberrant pattern of Inv1 with a deletion of 2.56 kb and a duplication of 227.3 kb inserted in the rejoining junction within the F8 gene. Our results suggested that this complex genomic rearrangement was generated by two distinct repair mechanisms of fork stalling and template switching/microhomology-mediated break-induced replication (FoSTeS/MMBIR) and nonallelic homologous recombination (NAHR).


Author(s):  
Marco van der Looij ◽  
Anne-Marie Cleton-Jansen ◽  
Ronald van Eijk ◽  
Hans Morreau ◽  
Margreethe van Vliet ◽  
...  

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