Transcription factor binding kinetics and transcriptional bursting: What do we really know?

Current Opinion in Structural Biology ◽

10.1016/j.sbi.2021.08.002 ◽

2021 ◽

Vol 71 ◽

pp. 239-248

Author(s):

Matteo Mazzocca ◽

Emanuele Colombo ◽

Andrea Callegari ◽

Davide Mazza

Keyword(s):

Transcription Factor ◽

Transcription Factor Binding ◽

Binding Kinetics ◽

Factor Binding ◽

Transcriptional Bursting

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Ordering up gene expression by slowing down transcription factor binding kinetics

Current Genetics ◽

10.1007/s00294-018-0896-7 ◽

2018 ◽

Vol 65 (2) ◽

pp. 401-406 ◽

Author(s):

Matthew J. Culyba

Keyword(s):

Gene Expression ◽

Transcription Factor ◽

Transcription Factor Binding ◽

Binding Kinetics ◽

Factor Binding ◽

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Single molecule fluorescence methodologies for investigating transcription factor binding kinetics to nucleosomes and DNA

Methods ◽

10.1016/j.ymeth.2014.09.011 ◽

2014 ◽

Vol 70 (2-3) ◽

pp. 108-118 ◽

Author(s):

Yi Luo ◽

Justin A. North ◽

Michael G. Poirier

Keyword(s):

Transcription Factor ◽

Single Molecule ◽

Transcription Factor Binding ◽

Binding Kinetics ◽

Single Molecule Fluorescence ◽

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Quantitative Transcription Factor Binding Kinetics at the Single-Molecule Level

Biophysical Journal ◽

10.1016/j.bpj.2008.09.040 ◽

2009 ◽

Vol 96 (2) ◽

pp. 609-620 ◽

Author(s):

Yufang Wang ◽

Ling Guo ◽

Ido Golding ◽

Edward C. Cox ◽

N.P. Ong

Keyword(s):

Transcription Factor ◽

Single Molecule ◽

Transcription Factor Binding ◽

Binding Kinetics ◽

Single Molecule Level ◽

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Transcription factor binding kinetics constrain noise suppression via negative feedback

Nature Communications ◽

10.1038/ncomms2867 ◽

2013 ◽

Vol 4 (1) ◽

Author(s):

Andreas Grönlund ◽

Per Lötstedt ◽

Johan Elf

Keyword(s):

Transcription Factor ◽

Negative Feedback ◽

Noise Suppression ◽

Transcription Factor Binding ◽

Binding Kinetics ◽

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Author response for "Transcription factor binding at immunoglobulin enhancers is linked to somatic hypermutation targeting"

10.1002/eji.201948357/v2/response1 ◽

2019 ◽

Author(s):

Ravi K. Dinesh ◽

Benjamin Barnhill ◽

Anoj Ilanges ◽

Lizhen Wu ◽

Daniel A. Michelson ◽

...

Keyword(s):

Transcription Factor ◽

Somatic Hypermutation ◽

Transcription Factor Binding ◽

Author Response ◽

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Decision letter for "Transcription factor binding at immunoglobulin enhancers is linked to somatic hypermutation targeting"

10.1002/eji.201948357/v2/decision1 ◽

2019 ◽

Keyword(s):

Transcription Factor ◽

Somatic Hypermutation ◽

Transcription Factor Binding ◽

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Faculty Opinions recommendation of Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1017662.206496 ◽

2004 ◽

Author(s):

Carlos F Barbas

Keyword(s):

Transcription Factor ◽

Binding Sites ◽

Noncoding Rnas ◽

Transcription Factor Binding Sites ◽

Transcription Factor Binding ◽

Human Chromosomes ◽

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Faculty Opinions recommendation of Position specific variation in the rate of evolution in transcription factor binding sites.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1022543.258615 ◽

2004 ◽

Author(s):

Emmanouil Dermitzakis

Keyword(s):

Transcription Factor ◽

Binding Sites ◽

Transcription Factor Binding Sites ◽

Transcription Factor Binding ◽

Factor Binding ◽

Rate Of Evolution ◽

Specific Variation

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Faculty Opinions recommendation of Divergence of transcription factor binding sites across related yeast species.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1089279.548953 ◽

2007 ◽

Author(s):

Emmanouil Dermitzakis

Keyword(s):

Transcription Factor ◽

Binding Sites ◽

Yeast Species ◽

Transcription Factor Binding Sites ◽

Transcription Factor Binding ◽

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Faculty Opinions recommendation of A competitive transcription factor binding mechanism determines the timing of late cell cycle-dependent gene expression.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.2947957.5387054 ◽

2010 ◽

Author(s):

Robert De Bruin

Keyword(s):

Gene Expression ◽

Transcription Factor ◽

Transcription Factor Binding ◽

Binding Mechanism ◽

Factor Binding ◽

Cycle Dependent

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