Environment-Specific Force Field for Intrinsically Disordered and Ordered Proteins

2020 ◽  
Vol 60 (4) ◽  
pp. 2257-2267 ◽  
Author(s):  
Dong Song ◽  
Hao Liu ◽  
Ray Luo ◽  
Hai-Feng Chen
Keyword(s):  
Force Field ◽  
Specific Force ◽  
Intrinsically Disordered

Intrinsically disordered protein-specific force field CHARMM36IDPSFF

2018 ◽  
Vol 92 (4) ◽  
pp. 1722-1735 ◽  
Author(s):  
Hao Liu ◽  
Dong Song ◽  
Hui Lu ◽  
Ray Luo ◽  
Hai-Feng Chen
Keyword(s):  
Force Field ◽  
Intrinsically Disordered Protein ◽  
Specific Force ◽  
Intrinsically Disordered ◽  
Disordered Protein

Extensive Evaluation of Environment-specific Force Field for Ordered and Disordered Proteins

2021 ◽  
Author(s):  
Xiaocheng Cui ◽  
Hao Liu ◽  
Ashfaq Ur Rehman ◽  
Haifeng Chen
Keyword(s):  
Force Field ◽  
Intrinsically Disordered Proteins ◽  
Tertiary Structure ◽  
Experimental Methods ◽  
Human Diseases ◽  
Disordered Proteins ◽  
Specific Force ◽  
Intrinsically Disordered ◽  
Extensive Evaluation

Intrinsically disordered proteins (IDPs) have not fixed tertiary structure under physiology condition and associate with many human diseases. Because IDPs have the characters of diverse conformation, current experimental methods can...

Specific force field parameters determination for the hybridab initioQM/MM LSCF method

2002 ◽  
Vol 23 (6) ◽  
pp. 610-624 ◽  
Author(s):  
Nicolas Ferré ◽  
Xavier Assfeld ◽  
Jean-Louis Rivail
Keyword(s):  
Force Field ◽  
Specific Force ◽  
Force Field Parameters

scholarly journals Correction: Conformation dynamics of the intrinsically disordered protein c-Myb with the ff99IDPs force field

RSC Advances ◽  
2017 ◽  
Vol 7 (51) ◽  
pp. 32093-32093
Author(s):  
Xiang Guo ◽  
Jincheng Han ◽  
Ray Luo ◽  
Hai-Feng Chen
Keyword(s):  
Force Field ◽  
Protein C ◽  
Intrinsically Disordered Protein ◽  
Intrinsically Disordered ◽  
Disordered Protein

Correction for ‘Conformation dynamics of the intrinsically disordered protein c-Myb with the ff99IDPs force field’ by Xiang Guo et al., RSC Adv., 2017, 7, 29713–29721.

Significant Refinement of Protein Structure Models Using a Residue-Specific Force Field

2015 ◽  
Vol 11 (4) ◽  
pp. 1949-1956 ◽  
Author(s):  
Sangni Xun ◽  
Fan Jiang ◽  
Yun-Dong Wu
Keyword(s):  
Protein Structure ◽  
Force Field ◽  
Specific Force

scholarly journals Rescuing the Over-Collapse of Intrinsically Disordered Proteins using a Force Field Derived by a New Paradigm

2016 ◽  
Vol 110 (3) ◽  
pp. 556a
Author(s):  
Davide Mercadante ◽  
Sigrid Milles ◽  
Gustavo Fuertes ◽  
Dmitri Svergun ◽  
Edward A. Lemke ◽  
...  
Keyword(s):  
Force Field ◽  
Intrinsically Disordered Proteins ◽  
Disordered Proteins ◽  
New Paradigm ◽  
Intrinsically Disordered

Residue-Specific Force Field Based on the Protein Coil Library. RSFF1: Modification of OPLS-AA/L

2014 ◽  
Vol 118 (25) ◽  
pp. 6983-6998 ◽  
Author(s):  
Fan Jiang ◽  
Chen-Yang Zhou ◽  
Yun-Dong Wu
Keyword(s):  
Force Field ◽  
Specific Force
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