scholarly journals Toward the Accuracy and Speed of Protein Side-Chain Packing: A Systematic Study on Rotamer Libraries

2019 ◽  
Vol 60 (1) ◽  
pp. 410-420 ◽  
Author(s):  
Xiaoqiang Huang ◽  
Robin Pearce ◽  
Yang Zhang
Keyword(s):  
Systematic Study ◽  
Side Chain ◽  
Chain Packing ◽  
Side Chain Packing

Side chain packing states of chitosan‐based supramolecular derivatives containing long alkyl side chains

2020 ◽  
Vol 3 (2) ◽  
Author(s):  
Lingzhi Liu ◽  
Dong Lyu ◽  
Mingyue Xiang ◽  
Yongfeng Men
Keyword(s):  
Side Chain ◽  
Side Chains ◽  
Chain Packing ◽  
Alkyl Side Chains ◽  
Side Chain Packing

scholarly journals Accurate calculation of side chain packing and free energy with applications to protein molecular dynamics

2018 ◽  
Vol 14 (12) ◽  
pp. e1006342 ◽  
Author(s):  
John M. Jumper ◽  
Nabil F. Faruk ◽  
Karl F. Freed ◽  
Tobin R. Sosnick
Keyword(s):  
Molecular Dynamics ◽  
Free Energy ◽  
Side Chain ◽  
Accurate Calculation ◽  
Chain Packing ◽  
Protein Molecular Dynamics ◽  
Side Chain Packing

scholarly journals The use of side-chain packing methods in modeling bacteriophage repressor and cro proteins

1995 ◽  
Vol 4 (11) ◽  
pp. 2300-2309 ◽  
Author(s):  
Su Yun Chung ◽  
S. Subbiah
Keyword(s):  
Side Chain ◽  
Chain Packing ◽  
Side Chain Packing

Side Chain Packing of the N- and C-Terminal Helices Plays a Critical Role in the Kinetics of CytochromecFolding†

Biochemistry ◽  
1996 ◽  
Vol 35 (17) ◽  
pp. 5538-5549 ◽  
Author(s):  
Wilfredo Colón ◽  
Gülnur A. Elöve ◽  
L. Paul Wakem ◽  
Fred Sherman ◽  
Heinrich Roder
Keyword(s):  
Critical Role ◽  
Side Chain ◽  
Chain Packing ◽  
Kinetics Of ◽  
Side Chain Packing

A new pairwise folding potential based on improved decoy generation and side-chain packing

2003 ◽  
Vol 54 (2) ◽  
pp. 303-314 ◽  
Author(s):  
C. Loose ◽  
J. L. Klepeis ◽  
C. A. Floudas
Keyword(s):  
Side Chain ◽  
Chain Packing ◽  
Folding Potential ◽  
Side Chain Packing

scholarly journals Side-chain Packing Using SE(3)-Transformer

2021 ◽  
Author(s):  
Akhil Jindal ◽  
Sergei Kotelnikov ◽  
Dzmitry Padhorny ◽  
Dima Kozakov ◽  
Yimin Zhu ◽  
...  
Keyword(s):  
Side Chain ◽  
Chain Packing ◽  
Side Chain Packing

scholarly journals OPUS-DOSP: A Distance- and Orientation-Dependent All-Atom Potential Derived from Side-Chain Packing

2017 ◽  
Vol 429 (20) ◽  
pp. 3113-3120 ◽  
Author(s):  
Gang Xu ◽  
Tianqi Ma ◽  
Tianwu Zang ◽  
Weitao Sun ◽  
Qinghua Wang ◽  
...  
Keyword(s):  
Side Chain ◽  
Chain Packing ◽  
Atom Potential ◽  
Side Chain Packing
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