folding potential
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2021 ◽  
Vol 67 (2 Mar-Apr) ◽  
pp. 276
Author(s):  
S. Hamada ◽  
Awad A. Ibraheem

Available experimental angular distribution data for 6Li+28Si elastic scattering in the energy range 16 – 318 MeV are re-analyzed phenomenologically on the basis of optical model using Woods-Saxon (WS) potentials for both real and imaginary parts, while the semi microscopic analysis was performed on the basis of cluster folding potential. Cluster folding potential was generated based on the appreciable cluster structure and breakup of 6Li into a deuteron orbiting a core of α-particle. Although several data sets in a wide range of energies are subjected to investigation, the theoretical calculations using the different concerned potentials are fairly reproduced the experimental data in the whole energy range. The extracted real and imaginary volume integrals and reaction cross sections values are compared to the previously reported ones and they found to be in a good agreement


2020 ◽  
Vol 66 (3 May-Jun) ◽  
pp. 322
Author(s):  
Sh. Hamada ◽  
B. Alshahrani ◽  
Abd Elrahman Elgamala ◽  
N. Darwish ◽  
I. Bondouk ◽  
...  

Available experimental angular distributions for 6Li elastically scattered from 16O nucleus in the energy range 13.0–50.0 MeV are reanalyzed within the framework of optical potential, double folding optical potential as well as cluster folding potential. Special interest was paid to the cluster folding based on the well-known cluster structure of 6Li. Elastic scattering data for 6Li+16O system plotted as a function of momentum transfer showed that the real Coulomb nuclear interference region independent of the bombarding energy. This structural behavior for the data could be used to define the interaction potential with some certainty and to extract reliable values for the renormalization factors.  


2020 ◽  
Vol 1555 ◽  
pp. 012018
Author(s):  
K.V. Lukyanov ◽  
V.K. Lukyanov ◽  
E.V. Zemlyanaya ◽  
Ibrahim Abdulmagead

Author(s):  
M.B. Kakenov ◽  
E.V. Zemlyanaya

The MPI implementation of the calculation of the microscopic optical potential of nucleon-nucleus scattering within the single folding model has been developed. The folding potential and the corresponding differential cross section of the 11Li + p elastic scattering have been calculated at 62 MeV/nucleon on the heterogeneous cluster "HybriLIT" of the Multifunctional Information and Computational Complex (MICC) of the Laboratory of Information Technologies of JINR. The agreement between experimental data and numerical results for various models of the 11Li density distribution used in the construction of the folding potential is demonstrated


2019 ◽  
Author(s):  
Bernard Legras ◽  
Silvia Bucci

Abstract. We study the transport pathways from the top of convective clouds to the lower tropical stratosphere during the Asian monsoon, using massive Lagrangian trajectories driven by observed clouds and the two reanalysis ERA-Interim and ERA5 with diabatic and kinematic vertical motions. We find that the upward propagation of convective impact is very similar for the kinematic and diabatic calculations using ERA5 while the two cases strongly differ for ERA-Interim. The separation of descending and ascending motion occurs at a crossover level which is slightly above the all sky zero level of radiative heating rate, except over the Tibetan plateau. The parcels that stay confined within the Asian monsoon anticyclone and reach 380 K are mostly of continental origin while maritime sources are dominating when the whole global 380 K surface is considered. We find that the strong impact of the Tibetan plateau with respect to its share of high clouds is entirely due to its elevated proportion of high clouds above the crossover. We find no trace of a vertical conduit above convection over the Tibetan plateau; parcels are rather entrained into an ascending spiral motion that spans the whole anticyclone. The mean age of parcels with respect to convection exhibits a minimum at the centre of the Asian monsoon anticyclone due to the permanent renewal by fresh convective air and largest values on the periphery as air spirals out. The contrast is reduced by dilution for increasing potential temperature. We find that the confinement above 360 K can be represented, on the average, by a simple 1D process of diabatic advection with loss. The mean loss time is about 13 days and uniform over the range 360 K to 420 K which is to be compared with a total circulation time of two to three weeks around the anticyclone. The vertical dilution is consequently exponential with an e-folding potential temperature scale of 15 K (about 3 km).


2019 ◽  
Author(s):  
Xiaofei Yang ◽  
Jitender Cheema ◽  
Yueying Zhang ◽  
Hongjing Deng ◽  
Susan Duncan ◽  
...  

AbstractGuanine-rich sequences are able to form complex RNA structures termed RNA G-quadruplexes in vitro. Because of their high stability, RNA G-quadruplexes are proposed to exist in vivo and are suggested to be associated with important biological relevance. However, there is a lack of direct evidence for RNA G-quadruplex formation in living cells. Therefore, it is unclear whether any purported functions are associated with the specific sequence content or the formation of an RNA G-quadruplex structure. Here, we profiled the landscape of those guanine-rich regions with the in vitro folding potential in the Arabidopsis transcriptome. We found a global enrichment of RNA G-quadruplexes with two G-quartets whereby the folding potential is strongly influenced by RNA secondary structures. Using in vitro and in vivo RNA chemical structure profiling, we determined that hundreds of RNA G-quadruplex structures are strongly folded in both Arabidopsis and rice, providing direct evidence of RNA G-quadruplex formation in living eukaryotic cells. Subsequent genetic and biochemical analysis showed that RNA G-quadruplex folding was sufficient to regulate translation and modulate plant growth. Our study reveals the existence of RNA G-quadruplex in vivo, and indicates that RNA G-quadruplex structures act as important regulators of plant development and growth.


2019 ◽  
Vol 74 (7) ◽  
pp. 551-560 ◽  
Author(s):  
M. Sayahi ◽  
V. Dehghani ◽  
D. Naderi ◽  
S.A. Alavi

AbstractThe alpha decay half-lives ofZ= 118–121 superheavy nuclei withA≤ 300 are calculated by using the density-dependent nuclear potential in the framework of the WKB method. The Paris and Ried M3Y nucleon-nucleon potentials are used in the calculation of the double-folding potential, which the Paris potential predicts to be the larger value of the half-lives. The obtained half-lives with Paris parameterisation are compared with those using three semi-empirical formulas, namely the improved Sahu formula, the universal decay law for alpha decay, and the formula for both alpha decay and cluster decay. The predicted half-lives with double-folding lie in between the improved Sahu and universal decay law formulas for both alpha and cluster decay. However, it is closer to the universal decay law formula and obeys its trend in all the studied superheavy nuclei.


2019 ◽  
Vol 47 (12) ◽  
pp. 6098-6113 ◽  
Author(s):  
Emilia Puig Lombardi ◽  
Allyson Holmes ◽  
Daniela Verga ◽  
Marie-Paule Teulade-Fichou ◽  
Alain Nicolas ◽  
...  

Abstract G-quadruplexes play various roles in multiple biological processes, which can be positive when a G4 is involved in the regulation of gene expression or detrimental when the folding of a stable G4 impairs DNA replication promoting genome instability. This duality interrogates the significance of their presence within genomes. To address the potential biased evolution of G4 motifs, we analyzed their occurrence, features and polymorphisms in a large spectrum of species. We found extreme bias of the short-looped G4 motifs, which are the most thermodynamically stable in vitro and thus carry the highest folding potential in vivo. In the human genome, there is an over-representation of single-nucleotide-loop G4 motifs (G4-L1), which are highly conserved among humans and show a striking excess of the thermodynamically least stable G4-L1A (G3AG3AG3AG3) sequences. Functional assays in yeast showed that G4-L1A caused the lowest levels of both spontaneous and G4-ligand-induced instability. Analyses across 600 species revealed the depletion of the most stable G4-L1C/T quadruplexes in most genomes in favor of G4-L1A in vertebrates or G4-L1G in other eukaryotes. We discuss how these trends might be the result of species-specific mutagenic processes associated to a negative selection against the most stable motifs, thus neutralizing their detrimental effects on genome stability while preserving positive G4-associated biological roles.


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