Sequence-Dependent Solvation Dynamics of Minor-Groove Bound Ligand Inside Duplex-DNA

2015 ◽  
Vol 119 (34) ◽  
pp. 11019-11029 ◽  
Author(s):  
Sachin Dev Verma ◽  
Nibedita Pal ◽  
Moirangthem Kiran Singh ◽  
Sobhan Sen
Keyword(s):  
Minor Groove ◽  
Solvation Dynamics ◽  
Duplex Dna ◽  
Sequence Dependent

Studies of DNA dumbbells VII: Evaluation of the next-nearest-neighbor sequence-dependent interactions in duplex DNA

Biopolymers ◽  
1999 ◽  
Vol 52 (1) ◽  
pp. 29-56 ◽  
Author(s):  
Richard Owczarzy ◽  
Peter M. Vallone ◽  
Robert F. Goldstein ◽  
Albert S. Benight
Keyword(s):  
Nearest Neighbor ◽  
Duplex Dna ◽  
Sequence Dependent

scholarly journals Isosteric and fluorescent DNA base pair formed by 4-amino-phthalimide and 2,4-diaminopyrimidine: melting, structure, and THz polar solvation dynamics

2016 ◽  
Vol 18 (9) ◽  
pp. 6813-6820 ◽  
Author(s):  
L. Dehmel ◽  
F. Berndt ◽  
M. Weinberger ◽  
M. Sajadi ◽  
I. Ioffe ◽  
...  
Keyword(s):  
Base Pair ◽  
Solvation Dynamics ◽  
Duplex Dna ◽  
Dna Base ◽  
Dna Base Pair ◽  
Polar Solvation

An artificial base pair in duplex DNA, formed by 2,4-diaminopyrimidine and fluorescent 4-aminophthalimide C-nucleosides, is characterized spectroscopically, for use in femtosecond solvation dynamics.

scholarly journals The Width of the Minor Groove Affects the Binding of the Bisquaternary Heterocycle SN-6999 to Duplex DNA

1996 ◽  
Vol 24 (7) ◽  
pp. 1287-1293 ◽  
Author(s):  
J. M. Rydzewski ◽  
W. Leupin ◽  
W. Chazin
Keyword(s):  
Minor Groove ◽  
Duplex Dna

Predicting sequence-dependent melting stability of short duplex DNA oligomers

Biopolymers ◽  
1997 ◽  
Vol 44 (3) ◽  
pp. 217-239 ◽  
Author(s):  
Richard Owczarzy ◽  
Peter M. Vallone ◽  
Frank J. Gallo ◽  
Teodoro M. Paner ◽  
Michael J. Lane ◽  
...  
Keyword(s):  
Duplex Dna ◽  
Dna Oligomers ◽  
Sequence Dependent
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