Common Decoy Distributions Simplify False Discovery Rate Estimation in Shotgun Proteomics

2022 ◽  
Author(s):  
Dominik Madej ◽  
Long Wu ◽  
Henry Lam
Keyword(s):  
False Discovery Rate ◽  
Shotgun Proteomics ◽  
Rate Estimation ◽  
False Discovery ◽  
False Discovery Rate Estimation

Unbiased False Discovery Rate Estimation for Shotgun Proteomics Based on the Target-Decoy Approach

2016 ◽  
Vol 16 (2) ◽  
pp. 393-397 ◽  
Author(s):  
Lev I. Levitsky ◽  
Mark V. Ivanov ◽  
Anna A. Lobas ◽  
Mikhail V. Gorshkov
Keyword(s):  
False Discovery Rate ◽  
Shotgun Proteomics ◽  
Rate Estimation ◽  
False Discovery ◽  
False Discovery Rate Estimation

Empirical approach to false discovery rate estimation in shotgun proteomics

2010 ◽  
Vol 24 (4) ◽  
pp. 454-462 ◽  
Author(s):  
Anton A. Goloborodko ◽  
Corina Mayerhofer ◽  
Alexander R. Zubarev ◽  
Irina A. Tarasova ◽  
Alexander V. Gorshkov ◽  
...  
Keyword(s):  
False Discovery Rate ◽  
Shotgun Proteomics ◽  
Empirical Approach ◽  
Rate Estimation ◽  
False Discovery ◽  
False Discovery Rate Estimation

scholarly journals A Scalable Approach for Protein False Discovery Rate Estimation in Large Proteomic Data Sets

2015 ◽  
Vol 14 (9) ◽  
pp. 2394-2404 ◽  
Author(s):  
Mikhail M. Savitski ◽  
Mathias Wilhelm ◽  
Hannes Hahne ◽  
Bernhard Kuster ◽  
Marcus Bantscheff
Keyword(s):  
False Discovery Rate ◽  
Data Sets ◽  
Rate Estimation ◽  
Proteomic Data ◽  
False Discovery ◽  
False Discovery Rate Estimation

Reverse and Random Decoy Methods for False Discovery Rate Estimation in High Mass Accuracy Peptide Spectral Library Searches

2018 ◽  
Vol 17 (2) ◽  
pp. 846-857 ◽  
Author(s):  
Zheng Zhang ◽  
Meghan Burke ◽  
Yuri A. Mirokhin ◽  
Dmitrii V. Tchekhovskoi ◽  
Sanford P. Markey ◽  
...  
Keyword(s):  
False Discovery Rate ◽  
Mass Accuracy ◽  
High Mass ◽  
High Mass Accuracy ◽  
Spectral Library ◽  
Rate Estimation ◽  
False Discovery ◽  
False Discovery Rate Estimation
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