Protein Contact Networks: An Emerging Paradigm in Chemistry

2012 ◽  
Vol 113 (3) ◽  
pp. 1598-1613 ◽  
Author(s):  
L. Di Paola ◽  
M. De Ruvo ◽  
P. Paci ◽  
D. Santoni ◽  
A. Giuliani
Keyword(s):  
Contact Networks ◽  
Protein Contact Networks

Disclosing Through Protein Contact Networks

2020 ◽  
pp. 7-20
Author(s):  
Luisa Di Paola ◽  
Giampiero Mei ◽  
Almerinda Di Venere ◽  
Alessandro Giuliani
Keyword(s):  
Contact Networks ◽  
Protein Contact Networks

Spectral reconstruction of protein contact networks

2017 ◽  
Vol 471 ◽  
pp. 804-817 ◽  
Author(s):  
Enrico Maiorino ◽  
Antonello Rizzi ◽  
Alireza Sadeghian ◽  
Alessandro Giuliani
Keyword(s):  
Contact Networks ◽  
Spectral Reconstruction ◽  
Protein Contact Networks

scholarly journals A generative model for protein contact networks

2016 ◽  
Vol 34 (7) ◽  
pp. 1441-1454 ◽  
Author(s):  
Lorenzo Livi ◽  
Enrico Maiorino ◽  
Alessandro Giuliani ◽  
Antonello Rizzi ◽  
Alireza Sadeghian
Keyword(s):  
Generative Model ◽  
Contact Networks ◽  
Protein Contact Networks

scholarly journals Assortative mixing in Protein Contact Networks and protein folding kinetics

2007 ◽  
Vol 23 (14) ◽  
pp. 1760-1767 ◽  
Author(s):  
Ganesh Bagler ◽  
Somdatta Sinha
Keyword(s):  
Protein Folding ◽  
Folding Kinetics ◽  
Contact Networks ◽  
Protein Contact Networks

Analysis of core–periphery organization in protein contact networks reveals groups of structurally and functionally critical residues

2015 ◽  
Vol 40 (4) ◽  
pp. 683-699 ◽  
Author(s):  
Arnold Emerson Isaac ◽  
Sitabhra Sinha
Keyword(s):  
Contact Networks ◽  
Critical Residues ◽  
Protein Contact Networks

AMINONET– a tool to construct and visualize amino acid networks, and to calculate topological parameters

2010 ◽  
Vol 43 (2) ◽  
pp. 367-369 ◽  
Author(s):  
Md. Aftabuddin ◽  
Sudip Kundu
Keyword(s):  
Amino Acid ◽  
Long Range ◽  
Short Range ◽  
Software Tool ◽  
Contact Networks ◽  
Topological Parameters ◽  
Structure File ◽  
Protein Contact Networks

AMINONETis a Java-based software tool to construct different protein contact networks (unweighted and weighted; long range, short range and any range; hydrophobic, hydrophilic, charged or all-amino-acid networks). The networks thus constructed can be visualized. The software will also help in the calculation of the values of the different topological parameters of the constructed networks. The user can either provide a PDB ID or upload a structure file in PDB format as input. If necessary, the user can also do the same for a large number of proteins, uploading a batch file as input (details described in the document available online).

scholarly journals Multifractal characterization of protein contact networks

2015 ◽  
Vol 428 ◽  
pp. 302-313 ◽  
Author(s):  
Enrico Maiorino ◽  
Lorenzo Livi ◽  
Alessandro Giuliani ◽  
Alireza Sadeghian ◽  
Antonello Rizzi
Keyword(s):  
Contact Networks ◽  
Protein Contact Networks
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