General Base Catalysis for Cleavage by the Active-Site Cytosine of the Hepatitis Delta Virus Ribozyme: QM/MM Calculations Establish Chemical Feasibility

Direct pKaMeasurement of the Active-Site Cytosine in a Genomic Hepatitis Delta Virus Ribozyme

Journal of the American Chemical Society ◽

10.1021/ja016091x ◽

2001 ◽

Vol 123 (35) ◽

pp. 8447-8452 ◽

Cited By ~ 54

Author(s):

Andrej Lupták ◽

Adrian R. Ferré-D'Amaré ◽

Kaihong Zhou ◽

Kurt W. Zilm ◽

Jennifer A. Doudna

Keyword(s):

Active Site ◽

Hepatitis Delta Virus ◽

Hepatitis Delta ◽

General Acid-Base Catalysis in the Mechanism of a Hepatitis Delta Virus Ribozyme

Science ◽

10.1126/science.287.5457.1493 ◽

2000 ◽

Vol 287 (5457) ◽

pp. 1493-1497 ◽

Cited By ~ 212

Author(s):

S. Nakano

Keyword(s):

Hepatitis Delta Virus ◽

Base Catalysis ◽

Acid Base ◽

Hepatitis Delta ◽

General Acid ◽

Faculty Opinions recommendation of General acid catalysis by the hepatitis delta virus ribozyme.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1030315.323505 ◽

2005 ◽

Author(s):

David MJ Lilley

Keyword(s):

Hepatitis Delta Virus ◽

Acid Catalysis ◽

Hepatitis Delta ◽

General Acid ◽

A role for upstream RNA structure in facilitating the catalytic fold of the genomic hepatitis delta virus ribozyme 1 1Edited by J. A. Doudna

Journal of Molecular Biology ◽

10.1006/jmbi.2000.3953 ◽

2000 ◽

Vol 301 (2) ◽

pp. 349-367 ◽

Cited By ~ 49

Author(s):

Durga M. Chadalavada ◽

Scott M. Knudsen ◽

Shu-ichi Nakano ◽

Philip C. Bevilacqua

Keyword(s):

Rna Structure ◽

Hepatitis Delta Virus ◽

Hepatitis Delta ◽

Energetic contribution of non-essential 5' sequence to catalysis in a hepatitis delta virus ribozyme

The EMBO Journal ◽

10.1093/emboj/20.17.4884 ◽

2001 ◽

Vol 20 (17) ◽

pp. 4884-4891 ◽

Cited By ~ 15

Author(s):

I.-h. Shih

Keyword(s):

Hepatitis Delta Virus ◽

Hepatitis Delta ◽

A circular trans-acting hepatitis delta virus ribozyme

Nucleic Acids Research ◽

10.1093/nar/21.18.4253 ◽

1993 ◽

Vol 21 (18) ◽

pp. 4253-4258 ◽

Cited By ~ 39

Author(s):

M. Puttaraju ◽

Anne T. Perrotta ◽

Michael D. Been

Keyword(s):

Hepatitis Delta Virus ◽

Hepatitis Delta ◽

Identification of the Catalytic Mg2+ Ion in the Hepatitis Delta Virus Ribozyme

Biochemistry ◽

10.1021/bi3013092 ◽

2013 ◽

Vol 52 (3) ◽

pp. 557-567 ◽

Cited By ~ 30

Author(s):

Ji Chen ◽

Abir Ganguly ◽

Zulaika Miswan ◽

Sharon Hammes-Schiffer ◽

Philip C. Bevilacqua ◽

...

Keyword(s):

Hepatitis Delta Virus ◽

Hepatitis Delta ◽

Crystallization and structure determination of a hepatitis delta virus ribozyme: use of the RNA-binding protein U1A as a crystallization module 1 1Edited by D. C. Rees

Journal of Molecular Biology ◽

10.1006/jmbi.1999.3398 ◽

2000 ◽

Vol 295 (3) ◽

pp. 541-556 ◽

Cited By ~ 88

Author(s):

Adrian R. Ferré-D’Amaré ◽

Jennifer A. Doudna

Keyword(s):

Structure Determination ◽

Hepatitis Delta Virus ◽

Rna Binding ◽

Binding Protein ◽

Rna Binding Protein ◽

Hepatitis Delta ◽

Density Functional Theory Investigation on the Mechanism of the Hepatitis Delta Virus Ribozyme

The Journal of Physical Chemistry B ◽

10.1021/jp064292n ◽

2007 ◽

Vol 111 (2) ◽

pp. 439-445 ◽

Cited By ~ 15

Author(s):

Haining Liu ◽

Jesse J. Robinet ◽

Sirinart Ananvoranich ◽

James W. Gauld

Keyword(s):

Density Functional Theory ◽

Hepatitis Delta Virus ◽

Density Functional ◽

Functional Theory ◽

Hepatitis Delta ◽

Chemical probing studies of variants of the genomic hepatitis delta virus ribozyme by primer extension analysis

Biochemistry ◽

10.1021/bi00168a025 ◽

1994 ◽

Vol 33 (2) ◽

pp. 583-592 ◽

Cited By ~ 26

Author(s):

P. K. R. Kumar ◽

Kazunari Taira ◽

Satoshi Nishikawa

Keyword(s):

Hepatitis Delta Virus ◽

Primer Extension ◽

Primer Extension Analysis ◽

Hepatitis Delta ◽

Chemical Probing ◽

Extension Analysis ◽