scholarly journals General Base Catalysis for Cleavage by the Active-Site Cytosine of the Hepatitis Delta Virus Ribozyme: QM/MM Calculations Establish Chemical Feasibility

2008 ◽  
Vol 112 (35) ◽  
pp. 11177-11187 ◽  
Author(s):  
Pavel Banáš ◽  
Lubomír Rulíšek ◽  
Veronika Hánošová ◽  
Daniel Svozil ◽  
Nils G. Walter ◽  
...  
Keyword(s):  
Active Site ◽  
Hepatitis Delta Virus ◽  
Base Catalysis ◽  
Hepatitis Delta ◽  
General Base ◽  
Hepatitis Delta Virus Ribozyme ◽  
Delta Virus

Direct pKaMeasurement of the Active-Site Cytosine in a Genomic Hepatitis Delta Virus Ribozyme

2001 ◽  
Vol 123 (35) ◽  
pp. 8447-8452 ◽  
Author(s):  
Andrej Lupták ◽  
Adrian R. Ferré-D'Amaré ◽  
Kaihong Zhou ◽  
Kurt W. Zilm ◽  
Jennifer A. Doudna
Keyword(s):  
Active Site ◽  
Hepatitis Delta Virus ◽  
Hepatitis Delta ◽  
Hepatitis Delta Virus Ribozyme ◽  
Delta Virus

A role for upstream RNA structure in facilitating the catalytic fold of the genomic hepatitis delta virus ribozyme 1 1Edited by J. A. Doudna

2000 ◽  
Vol 301 (2) ◽  
pp. 349-367 ◽  
Author(s):  
Durga M. Chadalavada ◽  
Scott M. Knudsen ◽  
Shu-ichi Nakano ◽  
Philip C. Bevilacqua
Keyword(s):  
Rna Structure ◽  
Hepatitis Delta Virus ◽  
Hepatitis Delta ◽  
Hepatitis Delta Virus Ribozyme ◽  
Delta Virus

scholarly journals A circular trans-acting hepatitis delta virus ribozyme

1993 ◽  
Vol 21 (18) ◽  
pp. 4253-4258 ◽  
Author(s):  
M. Puttaraju ◽  
Anne T. Perrotta ◽  
Michael D. Been
Keyword(s):  
Hepatitis Delta Virus ◽  
Hepatitis Delta ◽  
Hepatitis Delta Virus Ribozyme ◽  
Delta Virus

scholarly journals Identification of the Catalytic Mg2+ Ion in the Hepatitis Delta Virus Ribozyme

Biochemistry ◽  
2013 ◽  
Vol 52 (3) ◽  
pp. 557-567 ◽  
Author(s):  
Ji Chen ◽  
Abir Ganguly ◽  
Zulaika Miswan ◽  
Sharon Hammes-Schiffer ◽  
Philip C. Bevilacqua ◽  
...  
Keyword(s):  
Hepatitis Delta Virus ◽  
Hepatitis Delta ◽  
Hepatitis Delta Virus Ribozyme ◽  
Delta Virus

Density Functional Theory Investigation on the Mechanism of the Hepatitis Delta Virus Ribozyme

2007 ◽  
Vol 111 (2) ◽  
pp. 439-445 ◽  
Author(s):  
Haining Liu ◽  
Jesse J. Robinet ◽  
Sirinart Ananvoranich ◽  
James W. Gauld
Keyword(s):  
Density Functional Theory ◽  
Hepatitis Delta Virus ◽  
Density Functional ◽  
Functional Theory ◽  
Hepatitis Delta ◽  
Hepatitis Delta Virus Ribozyme ◽  
Delta Virus

Chemical probing studies of variants of the genomic hepatitis delta virus ribozyme by primer extension analysis

Biochemistry ◽  
1994 ◽  
Vol 33 (2) ◽  
pp. 583-592 ◽  
Author(s):  
P. K. R. Kumar ◽  
Kazunari Taira ◽  
Satoshi Nishikawa
Keyword(s):  
Hepatitis Delta Virus ◽  
Primer Extension ◽  
Primer Extension Analysis ◽  
Hepatitis Delta ◽  
Hepatitis Delta Virus Ribozyme ◽  
Chemical Probing ◽  
Extension Analysis ◽  
Delta Virus
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