The tert-Butyl Side Chain: A Powerful Means to Lock Peptoid Amide Bonds in the Cis Conformation

2013 ◽  
Vol 15 (9) ◽  
pp. 2246-2249 ◽  
Author(s):  
O. Roy ◽  
C. Caumes ◽  
Y. Esvan ◽  
C. Didierjean ◽  
S. Faure ◽  
...  
2019 ◽  
Vol 116 (51) ◽  
pp. 25583-25590 ◽  
Author(s):  
Jethro L. Hemmann ◽  
Tristan Wagner ◽  
Seigo Shima ◽  
Julia A. Vorholt

Methylotrophy, the ability of microorganisms to grow on reduced one-carbon substrates such as methane or methanol, is a feature of various bacterial species. The prevailing oxidation pathway depends on tetrahydromethanopterin (H4MPT) and methylofuran (MYFR), an analog of methanofuran from methanogenic archaea. Formyltransferase/hydrolase complex (Fhc) generates formate from formyl-H4MPT in two consecutive reactions where MYFR acts as a carrier of one-carbon units. Recently, we chemically characterized MYFR from the model methylotrophMethylorubrum extorquensand identified an unusually long polyglutamate side chain of up to 24 glutamates. Here, we report on the crystal structure of Fhc to investigate the function of the polyglutamate side chain in MYFR and the relatedness of the enzyme complex with the orthologous enzymes in archaea. We identified MYFR as a prosthetic group that is tightly, but noncovalently, bound to Fhc. Surprisingly, the structure of Fhc together with MYFR revealed that the polyglutamate side chain of MYFR is branched and contains glutamates with amide bonds at both their α- and γ-carboxyl groups. This negatively charged and branched polyglutamate side chain interacts with a cluster of conserved positively charged residues of Fhc, allowing for strong interactions. The MYFR binding site is located equidistantly from the active site of the formyltransferase (FhcD) and metallo-hydrolase (FhcA). The polyglutamate serves therefore an additional function as a swinging linker to shuttle the one-carbon carrying amine between the two active sites, thereby likely increasing overall catalysis while decreasing the need for high intracellular MYFR concentrations.


2018 ◽  
Vol 151 ◽  
pp. 110-120 ◽  
Author(s):  
Ahmed Kotb ◽  
Nader S. Abutaleb ◽  
Mohamed A. Seleem ◽  
Mohamed Hagras ◽  
Haroon Mohammad ◽  
...  
Keyword(s):  

2009 ◽  
Vol 26 (2) ◽  
pp. 130-148 ◽  
Author(s):  
ARTHUR M. FELIX ◽  
EDGAR P. HEIMER ◽  
CHING-TSO WANG ◽  
THEODORE J. LAMBROS ◽  
JOSEPH SWISTOK ◽  
...  

Author(s):  
CHI-DEU CHANG ◽  
MICHINORI WAKI ◽  
MUSHTAQ AHMAD ◽  
JOHANNES MEIENHOFER ◽  
EDWIN O. LUNDELL ◽  
...  
Keyword(s):  

1992 ◽  
Vol 47 (8) ◽  
pp. 1170-1174 ◽  
Author(s):  
Susanne Hörger ◽  
Brigitte Gallert ◽  
Hartmut Echner ◽  
Wolfgang Voelter

The N-terminal fragment 1-12 of thymosin β10 was synthesized by the solid phase method using p-benzyloxybenzyl alcohol/polystyrene/divinylbenzeneresin and N-a-Fmoc amino acids with tert-butyl or Boc side chain protecting groups. Coupling was performed with BOP. The peptide was purified by preparative HPLC.


2020 ◽  
Vol 24 (9) ◽  
pp. 1700-1706
Author(s):  
Chen Hu ◽  
Minjie Liu ◽  
Xiaoping Yue ◽  
Zedu Huang ◽  
Fener Chen
Keyword(s):  

Foods ◽  
2020 ◽  
Vol 9 (5) ◽  
pp. 635
Author(s):  
Ryosuke Abe ◽  
Narumi Matsukaze ◽  
Hayato Kobayashi ◽  
Yusuke Yamaguchi ◽  
Harumi Uto-Kondo ◽  
...  

Hydrochloric acid (HCl)-treated wheat protein (HWP) is widely used in various products, including foods, cosmetics and shampoos. Recently, immediate hypersensitivity towards facial soap containing HWP has been reported. HCl treatment of protein causes hydrolysis not only of main-chain amide bonds (peptide-bond hydrolysis) but also of side-chain ones (deamidation). We have already reported that gliadin, the main allergen in wheat, reduces allergenicity and increases digestibility by deamidation, indicating that deamidation and peptide-bond hydrolysis are effective to reduce the allergenicity of wheat protein. However, transdermally administered HWP is assumed to induce sensitization to orally administered wheat protein even in those who have been taking wheat products daily before sensitization. The present study was conducted to examine which structural change is responsible for the induction of cutaneous sensitization by comparing the allergenicity of deamidated and/or peptide-bond-hydrolyzed wheat gliadin. Because we have developed a deamidation method without causing peptide-bond hydrolysis, only deamidated wheat gliadin is available. Therefore, after deamidated-only, hydrolyzed-only, and deamidated and hydrolyzed gliadins were transdermally administered to mice for several weeks, the corresponding gliadin was intraperitoneally administered and allergenicity was evaluated. Transdermal administration of deamidated and hydrolyzed gliadin induced severe allergic reaction, while that of deamidated-only and hydrolyzed-only gliadin showed almost no allergic response. This result indicates that both deamidation and peptide-bond hydrolysis are necessary to increase the allergenic potency of transdermally administered wheat gliadin.


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