scholarly journals A dynamic preferred direction model for the self-organization dynamics of bacterial microfluidic pumping

Soft Matter ◽  
2019 ◽  
Vol 15 (9) ◽  
pp. 2032-2042
Author(s):  
Daniel Svenšek ◽  
Harald Pleiner ◽  
Helmut R. Brand

We set up a continuum model capable of describing the pumping self-organization mechanism of the bacteria and quantifying it to the extent that an agreement with the experimentally observed channel width dependence of the pumping is reached.

2021 ◽  
Vol 15 ◽  
Author(s):  
Hiromichi Tsukada ◽  
Minoru Tsukada

The spatiotemporal learning rule (STLR) proposed based on hippocampal neurophysiological experiments is essentially different from the Hebbian learning rule (HEBLR) in terms of the self-organization mechanism. The difference is the self-organization of information from the external world by firing (HEBLR) or not firing (STLR) output neurons. Here, we describe the differences of the self-organization mechanism between the two learning rules by simulating neural network models trained on relatively similar spatiotemporal context information. Comparing the weight distributions after training, the HEBLR shows a unimodal distribution near the training vector, whereas the STLR shows a multimodal distribution. We analyzed the shape of the weight distribution in response to temporal changes in contextual information and found that the HEBLR does not change the shape of the weight distribution for time-varying spatiotemporal contextual information, whereas the STLR is sensitive to slight differences in spatiotemporal contexts and produces a multimodal distribution. These results suggest a critical difference in the dynamic change of synaptic weight distributions between the HEBLR and STLR in contextual learning. They also capture the characteristics of the pattern completion in the HEBLR and the pattern discrimination in the STLR, which adequately explain the self-organization mechanism of contextual information learning.


Polymers ◽  
2021 ◽  
Vol 13 (12) ◽  
pp. 1932
Author(s):  
Jun-Yeong Yang ◽  
Sunghoon Jung ◽  
Eun-Yeon Byeon ◽  
Hyun Hwi Lee ◽  
Do-Geun Kim ◽  
...  

This work reports the self-organization of dimple nanostructures on a polyethylene naphthalate (PEN) surface where an Ar ion beam was irradiated at an ion energy of 600 eV. The peak-to-peak roughness and diameter of dimple nanostructures were 29.1~53.4 nm and 63.4~77.6 nm, respectively. The electron energy loss spectrum at the peaks and troughs of dimples showed similar C=C, C=O, and O=CH bonding statuses. In addition, wide-angle X-ray scattering showed that Ar ion beam irradiation did not induce crystallization of the PEN surface. That meant that the self-organization on the PEN surface could be due to the ion-induced surface instability of the amorphous layer and not due to the partial crystallinity differences of the peaks and valleys. A nonlinear continuum model described surface instability due to Ar ion-induced sputtering. The Kuramoto–Sivashinsky model reproduced the dimple morphologies numerically, which was similar to the experimentally observed dimple patterns. This preliminary validation showed the possibility that the continuum equation used for metal and semiconductor surfaces could be applied to polymer surfaces where ion beam sputtering occurred.


2004 ◽  
Vol 64 (6) ◽  
pp. 819-825 ◽  
Author(s):  
Masanori Kikuchi ◽  
Toshiyuki Ikoma ◽  
Soichiro Itoh ◽  
Hiroko N Matsumoto ◽  
Yoshihisa Koyama ◽  
...  

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