scholarly journals Tracing the colonization of Madeira and the Canary Islands by Drosophila subobscura through the study of the rp49 gene region

1998 ◽  
Vol 11 (4) ◽  
pp. 439-452 ◽  
Author(s):  
M. Khadem ◽  
J. Rozas ◽  
C. Segarra ◽  
A. Brehm ◽  
M. Aguade
Genetics ◽  
1999 ◽  
Vol 151 (1) ◽  
pp. 189-202 ◽  
Author(s):  
Julio Rozas ◽  
Carmen Segarra ◽  
Griselda Ribó ◽  
Montserrat Aguadé

Abstract Nucleotide variation at the ribosomal protein 49 (rp49) gene region has been studied in 75 lines of Drosophila subobscura belonging to four chromosomal arrangements (Ost, O3+4, O3+4+8, and O3+4+23). The location of the rp49 gene region within the inversion loop differs among heterokaryotypes: it is very close to one of the breakpoints in heterozygotes involving Ost chromosomes, while it is in a more central position in all other heterokaryotypes. The distribution of nucleotide polymorphism in the different arrangements is consistent with a monophyletic origin of the inversions. The data also provide evidence that gene conversion and possibly double crossover are involved in shuffling nucleotide variation among gene arrangements. The analyses reveal that the level of genetic exchange is higher when the region is located in a more central position of the inverted fragment than when it is close to the breakpoints. The pairwise difference distributions as well as the negative values of Tajima's and Fu and Li's statistics further support the hypothesis that nucleotide variation within chromosomal arrangements still reflects expansion after the origin of the inversions. Under the expansion model, we have estimated the time of origin of the studied inversions.


Genetics ◽  
1990 ◽  
Vol 126 (2) ◽  
pp. 417-426
Author(s):  
J Rozas ◽  
M Aguadé

Abstract Restriction map variation in 107 lines extracted from two natural populations of Drosophila subobscura was investigated with seven four-nucleotide-recognizing enzymes in a 1.6-kb region including the rp49 gene, that is located very close to the proximal breakpoint of inversion O3. Fourteen restriction site and 8 length polymorphisms, resulting in 73 haplotypes, have been identified. Estimated heterozygosity per nucleotide, pi = 0.0045, is comparable to the average nucleotide variation observed in Drosophila melanogaster. Because of the location of the rp49 region in D. subobscura, variation in three different gene arrangements-Ost, O3 + 4 and O3 + 4 + 8-has been compared. Out of 14 restriction site polymorphisms, 3 are shared by Ost, O3 + 4 and O3 + 4 + 8, and 3 additional ones are shared by Ost and O3 + 4, evidencing extensive genetic exchange among these polymorphic inversions. In agreement with previous data, the higher level of variation of O3 + 4 (as measured by haplotype diversity and nucleotide variation) suggests that O3 + 4 may be ancestral in relationship to extant gene arrangements.


Evolution ◽  
1980 ◽  
Vol 34 (5) ◽  
pp. 875 ◽  
Author(s):  
V. M. Cabrera ◽  
A. M. Gonzalez ◽  
A. Gullon

Genetics ◽  
1999 ◽  
Vol 153 (2) ◽  
pp. 871-889 ◽  
Author(s):  
Àurea Navarro-Sabaté ◽  
Montserrat Aguadé ◽  
Carmen Segarra

Abstract The Acph-1 gene region was sequenced in 51 lines of Drosophila subobscura. Lines differ in their chromosomal arrangement for segment I of the O chromosome (Ost and O3+4) and in the Acph-1 electrophoretic allele (Acph-1100, Acph-1054, and Acph-1>100). The ACPH-1 protein exhibits much more variation than previously detected by electrophoresis. The amino acid replacements responsible for the Acph-1054 and Acph-1>100 electrophoretic variants are different within Ost and within O3+4, which invalidates all previous studies on linkage disequilibrium between chromosomal and allozyme polymorphisms at this locus. The Acph-1>100 allele within O3+4 has a recent origin, while both Acph-1054 alleles are rather old. Levels of nucleotide variation are higher within the O3+4 than within the Ost arrangement except for nonsynonymous sites. The McDonald and Kreitman test shows a significant excess of nonsynonymous polymorphisms within Ost when D. guanche is used as the outgroup. According to the nearly neutral model of molecular evolution, this excess is consistent with a smaller effective size of Ost relative to O3+4 arrangements. A smaller population size, a lower recombination, and a more recent bottleneck might be contributing to the smaller effective size of Ost.


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