Asaia bogorensis peritonitis identified by 16S ribosomal RNA sequence analysis in a patient receiving peritoneal dialysis

2004 ◽  
Vol 44 (2) ◽  
pp. e15-e17 ◽  
Author(s):  
Richard W Snyder ◽  
Jorg Ruhe ◽  
Sidney Kobrin ◽  
Alan Wasserstein ◽  
Christa Doline ◽  
...  
Keyword(s):  
Peritoneal Dialysis ◽  
Sequence Analysis ◽  
Ribosomal Rna ◽  
16S Ribosomal Rna ◽  
Rna Sequence

Bacillus piliformis infection (Tyzzer's disease) in a patient infected with HIV-1: Confirmation with 16S ribosomal RNA sequence analysis

1996 ◽  
Vol 34 (2) ◽  
pp. 343-348 ◽  
Author(s):  
Kathleen J. Smith ◽  
Henry G. Skelton ◽  
Edward J. Hilyard ◽  
Col Ted Hadfield ◽  
Robert S. Moeller ◽  
...  
Keyword(s):  
Sequence Analysis ◽  
Ribosomal Rna ◽  
16S Ribosomal Rna ◽  
Rna Sequence ◽  
Hiv 1

scholarly journals 16S ribosomal RNA sequence analysis for determination of phylogenetic relationship among methylotrophs

1990 ◽  
Vol 136 (1) ◽  
pp. 1-10 ◽  
Author(s):  
K. Tsuji ◽  
H. C. Tsien ◽  
R. S. Hanson ◽  
S. R. DePalma ◽  
R. Scholtz ◽  
...  
Keyword(s):  
Sequence Analysis ◽  
Phylogenetic Relationship ◽  
Ribosomal Rna ◽  
16S Ribosomal Rna ◽  
Rna Sequence

16S Ribosomal RNA (rDNA) Sequence Analysis and Phylogenetic Position of Sulfobacillus thermosulfidooxidans

1995 ◽  
Vol 17 (4) ◽  
pp. 509-512 ◽  
Author(s):  
Tatjana P. Tourova ◽  
Andrey B. Poltoraus ◽  
Irina A. Lebedeva ◽  
Iraida A. Tsaplina ◽  
Tatjana I. Bogdanova ◽  
...  
Keyword(s):  
Sequence Analysis ◽  
Ribosomal Rna ◽  
Rdna Sequence ◽  
16S Ribosomal Rna ◽  
Phylogenetic Position ◽  
Sulfobacillus Thermosulfidooxidans

scholarly journals A case of subdural empyema caused by Porphyromonas and Fusobacterium identified by 16S ribosomal RNA gene sequence analysis

2010 ◽  
Vol 50 (5) ◽  
pp. 311-314 ◽  
Author(s):  
Saiko Aiba ◽  
Yuka Watanabe ◽  
Masaaki Odaka ◽  
Toshiki Nakamura ◽  
Koichi Hirata
Keyword(s):  
Sequence Analysis ◽  
Ribosomal Rna ◽  
Gene Sequence ◽  
Subdural Empyema ◽  
16S Ribosomal Rna ◽  
Ribosomal Rna Gene ◽  
Gene Sequence Analysis ◽  
16S Ribosomal Rna Gene

scholarly journals Identification of characteristic oligonucleotides in the bacterial 16S ribosomal RNA sequence dataset

2002 ◽  
Vol 18 (2) ◽  
pp. 244-250 ◽  
Author(s):  
Z. Zhang ◽  
R. C. Willson ◽  
G. E. Fox
Keyword(s):  
Ribosomal Rna ◽  
16S Ribosomal Rna ◽  
Rna Sequence

scholarly journals MAPseq: improved speed, accuracy and consistency in ribosomal RNA sequence analysis

2017 ◽  
Author(s):  
João F Matias Rodrigues ◽  
Thomas SB Schmidt ◽  
Janko Tackmann ◽  
Christian von Mering
Keyword(s):  
Sequence Analysis ◽  
Microbial Communities ◽  
Study Design ◽  
Ribosomal Rna ◽  
Source Code ◽  
Shotgun Sequencing ◽  
Metagenomic Sequencing ◽  
Rna Sequence ◽  
Taxonomic Analysis ◽  
Speed Accuracy

AbstractMetagenomic sequencing has become crucial to studying microbial communities, but meaningful taxonomic analysis and inter-comparison of such data are still hampered by technical limitations, between-study design variability and inconsistencies between taxonomies used. Here we present MAPseq, a framework for reference-based rRNA metagenomic analysis that is up to 30% more accurate (F1/2 score) and up to one hundred times faster than existing solutions, providing in a single run multiple taxonomy classifications and hierarchical OTU mappings, for both amplicon and shotgun sequencing strategies, and for datasets of virtually any size. Availability: Source code and binaries are freely available at http://meringlab.org/software/mapseq/

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