scholarly journals Analytical calculation of nonadiabatic transition probabilities from the monodromy of differential equations

2003 ◽  
Vol 36 (21) ◽  
pp. 5803-5815 ◽  
Author(s):  
T Kato ◽  
K Nakamura ◽  
M Lakshmanan
Keyword(s):  
Differential Equations ◽  
Transition Probabilities ◽  
Analytical Calculation ◽  
Nonadiabatic Transition

Kolmogorov's differential equations for non-stationary, countable state Markov processes with uniformly continuous transition probabilities

1973 ◽  
Vol 73 (1) ◽  
pp. 119-138 ◽  
Author(s):  
Gerald S. Goodman ◽  
S. Johansen
Keyword(s):  
Markov Chain ◽  
Differential Equations ◽  
State Space ◽  
Markov Processes ◽  
Transition Probabilities ◽  
The State ◽  
Continuous Transition ◽  
Countable State Space ◽  
Countable State ◽  
Uniformly Continuous

1. SummaryWe shall consider a non-stationary Markov chain on a countable state space E. The transition probabilities {P(s, t), 0 ≤ s ≤ t <t0 ≤ ∞} are assumed to be continuous in (s, t) uniformly in the state i ε E.

scholarly journals A Model of Indel Evolution by Finite-State, Continuous-Time Machines

Genetics ◽  
2020 ◽  
Vol 216 (4) ◽  
pp. 1187-1204
Author(s):  
Ian Holmes
Keyword(s):  
Differential Equations ◽  
Continuous Time ◽  
Markov Models ◽  
Transition Probabilities ◽  
Simulated Data ◽  
Coarse Graining ◽  
Automata Theory ◽  
State Spaces ◽  
Finite State ◽  
Related Approach

We introduce a systematic method of approximating finite-time transition probabilities for continuous-time insertion-deletion models on sequences. The method uses automata theory to describe the action of an infinitesimal evolutionary generator on a probability distribution over alignments, where both the generator and the alignment distribution can be represented by pair hidden Markov models (HMMs). In general, combining HMMs in this way induces a multiplication of their state spaces; to control this, we introduce a coarse-graining operation to keep the state space at a constant size. This leads naturally to ordinary differential equations for the evolution of the transition probabilities of the approximating pair HMM. The TKF91 model emerges as an exact solution to these equations for the special case of single-residue indels. For the more general case of multiple-residue indels, the equations can be solved by numerical integration. Using simulated data, we show that the resulting distribution over alignments, when compared to previous approximations, is a better fit over a broader range of parameters. We also propose a related approach to develop differential equations for sufficient statistics to estimate the underlying instantaneous indel rates by expectation maximization. Our code and data are available at https://github.com/ihh/trajectory-likelihood.

On the differential equations for the transition probabilities of Markov processes with enumerably many states

1953 ◽  
Vol 49 (2) ◽  
pp. 247-262 ◽  
Author(s):  
G. E. H. Reuter ◽  
W. Ledermann ◽  
M. S. Bartlett
Keyword(s):  
Markov Process ◽  
Differential Equations ◽  
Conditional Probability ◽  
Markov Processes ◽  
Transition Probabilities ◽  
Regularity Conditions ◽  
Kolmogorov Equations ◽  
Image Position ◽  
Positive Integers

Let pik (s, t) (i, k = 1, 2, …; s ≤ t) be the transition probabilities of a Markov process in a system with an enumerable set of states. The states are labelled by positive integers, and pik (s, t) is the conditional probability that the system be in state k at time t, given that it was in state i at an earlier time s. If certain regularity conditions are imposed on the pik, they can be shown to satisfy the well-known Kolmogorov equations§

A description of the long-term behaviour of absorbing continuous-time Markov chains using a centre manifold

1990 ◽  
Vol 22 (1) ◽  
pp. 111-128 ◽  
Author(s):  
P. K. Pollett ◽  
A. J. Roberts
Keyword(s):  
Differential Equations ◽  
Markov Chains ◽  
Invariant Manifold ◽  
Markov Processes ◽  
Continuous Time ◽  
Transition Probabilities ◽  
Centre Manifold ◽  
Continuous Time Markov Chains ◽  
Linear Differential

We use the notion of an invariant manifold to describe the long-term behaviour of absorbing continuous-time Markov processes with a denumerable infinity of states. We show that there exists an invariant manifold for the forward differential equations and we are able to describe the evolution of the state probabilities on this manifold. Our approach gives rise to a new method for calculating conditional limiting distributions, one which is also appropriate for dealing with processes whose transition probabilities satisfy a system of non-linear differential equations.

A description of the long-term behaviour of absorbing continuous-time Markov chains using a centre manifold

1990 ◽  
Vol 22 (01) ◽  
pp. 111-128 ◽  
Author(s):  
P. K. Pollett ◽  
A. J. Roberts
Keyword(s):  
Differential Equations ◽  
Markov Chains ◽  
Invariant Manifold ◽  
Markov Processes ◽  
Continuous Time ◽  
Transition Probabilities ◽  
Centre Manifold ◽  
Continuous Time Markov Chains ◽  
Linear Differential

We use the notion of an invariant manifold to describe the long-term behaviour of absorbing continuous-time Markov processes with a denumerable infinity of states. We show that there exists an invariant manifold for the forward differential equations and we are able to describe the evolution of the state probabilities on this manifold. Our approach gives rise to a new method for calculating conditional limiting distributions, one which is also appropriate for dealing with processes whose transition probabilities satisfy a system of non-linear differential equations.

scholarly journals On a class of stochastic partial differential equations with multiple invariant measures

2021 ◽  
Vol 28 (3) ◽  
Author(s):  
Bálint Farkas ◽  
Martin Friesen ◽  
Barbara Rüdiger ◽  
Dennis Schroers
Keyword(s):  
Hilbert Space ◽  
Partial Differential Equations ◽  
Differential Equations ◽  
Stochastic Partial Differential Equations ◽  
Invariant Measures ◽  
Transition Probabilities ◽  
Time Behavior ◽  
Initial State ◽  
Partial Differential ◽  
Unique Mild Solution

AbstractIn this work we investigate the long-time behavior for Markov processes obtained as the unique mild solution to stochastic partial differential equations in a Hilbert space. We analyze the existence and characterization of invariant measures as well as convergence of transition probabilities. While in the existing literature typically uniqueness of invariant measures is studied, we focus on the case where the uniqueness of invariant measures fails to hold. Namely, introducing a generalized dissipativity condition combined with a decomposition of the Hilbert space, we prove the existence of multiple limiting distributions in dependence of the initial state of the process and study the convergence of transition probabilities in the Wasserstein 2-distance. Finally, we apply our results to Lévy driven Ornstein–Uhlenbeck processes, the Heath–Jarrow–Morton–Musiela equation as well as to stochastic partial differential equations with delay.

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