A Data-Driven Evolutionary Algorithm for Mapping Multibasin Protein Energy Landscapes

Journal of Computational Biology ◽

10.1089/cmb.2015.0107 ◽

2015 ◽

Vol 22 (9) ◽

pp. 844-860 ◽

Author(s):

Rudy Clausen ◽

Amarda Shehu

Keyword(s):

Evolutionary Algorithm ◽

Data Driven ◽

Energy Landscapes ◽

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A multiscale hybrid evolutionary algorithm to obtain sample-based representations of multi-basin protein energy landscapes

Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics - BCB '14 ◽

10.1145/2649387.2649390 ◽

2014 ◽

Author(s):

Rudy Clausen ◽

Amarda Shehu

Keyword(s):

Evolutionary Algorithm ◽

Energy Landscapes ◽

Hybrid Evolutionary Algorithm ◽

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From Optimization to Mapping: An Evolutionary Algorithm for Protein Energy Landscapes

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2016.2628745 ◽

2018 ◽

Vol 15 (3) ◽

pp. 719-731 ◽

Author(s):

Emmanuel Sapin ◽

Kenneth A. De Jong ◽

Amarda Shehu

Keyword(s):

Evolutionary Algorithm ◽

Energy Landscapes ◽

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Boosting Data-Driven Evolutionary Algorithm With Localized Data Generation

IEEE Transactions on Evolutionary Computation ◽

10.1109/tevc.2020.2979740 ◽

2020 ◽

Vol 24 (5) ◽

pp. 923-937 ◽

Author(s):

Jian-Yu Li ◽

Zhi-Hui Zhan ◽

Chuan Wang ◽

Hu Jin ◽

Jun Zhang

Keyword(s):

Evolutionary Algorithm ◽

Data Driven ◽

Data Generation

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Force as a single molecule probe of multidimensional protein energy landscapes

Current Opinion in Structural Biology ◽

10.1016/j.sbi.2012.11.007 ◽

2013 ◽

Vol 23 (1) ◽

pp. 48-57 ◽

Author(s):

Gabriel Žoldák ◽

Matthias Rief

Keyword(s):

Single Molecule ◽

Energy Landscapes ◽

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Complexity of Protein Energy Landscapes Studied by Solution NMR Relaxation Dispersion Experiments

The Journal of Physical Chemistry B ◽

10.1021/acs.jpcb.5b00212 ◽

2015 ◽

Vol 119 (9) ◽

pp. 3743-3754 ◽

Author(s):

Gennady Khirich ◽

J. Patrick Loria

Keyword(s):

Nmr Relaxation ◽

Relaxation Dispersion ◽

Solution Nmr ◽

Energy Landscapes ◽

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Evolutionary search strategies for efficient sample-based representations of multiple-basin protein energy landscapes

2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) ◽

10.1109/bibm.2015.7359649 ◽

2015 ◽

Author(s):

Emmanuel Sapin ◽

Kenneth A De Jong ◽

Amarda Shehu

Keyword(s):

Search Strategies ◽

Evolutionary Search ◽

Energy Landscapes ◽

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An evolutionary algorithm for the off-line data driven generation of fuzzy controllers for intelligent buildings

2004 IEEE International Conference on Systems, Man and Cybernetics (IEEE Cat. No.04CH37583) ◽

10.1109/icsmc.2004.1398270 ◽

2005 ◽

Author(s):

A. Lopez ◽

L. Sanchez ◽

F. Doctor ◽

H. Hagras ◽

V. Callaghan

Keyword(s):

Evolutionary Algorithm ◽

Data Driven ◽

Fuzzy Controllers ◽

Intelligent Buildings

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Local Transition Gradients Indicating the Global Attributes of Protein Energy Landscapes

The Journal of Physical Chemistry Letters ◽

10.1021/jz1004158 ◽

2010 ◽

Vol 1 (10) ◽

pp. 1580-1583 ◽

Author(s):

Francesco Rao

Keyword(s):

Energy Landscapes ◽

Protein Energy ◽

Local Transition

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A data-driven evolutionary algorithm for wind farm layout optimization

Energy ◽

10.1016/j.energy.2020.118310 ◽

2020 ◽

Vol 208 ◽

pp. 118310 ◽

Author(s):

Huan Long ◽

Peikun Li ◽

Wei Gu

Keyword(s):

Evolutionary Algorithm ◽

Wind Farm ◽

Layout Optimization ◽

Data Driven ◽

Wind Farm Layout ◽

Wind Farm Layout Optimization

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Protein energy landscapes as studied by a generalized-ensemble approach with Tsallis statistics

Chaos Solitons & Fractals ◽

10.1016/s0960-0779(01)00033-9 ◽

2002 ◽

Vol 13 (3) ◽

pp. 507-512 ◽

Author(s):

Ulrich H.E Hansmann

Keyword(s):

Energy Landscapes ◽

Tsallis Statistics ◽

Ensemble Approach ◽

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