A multiple alignment program for protein sequences

1987 ◽  
Vol 3 (2) ◽  
pp. 111-114 ◽  
Author(s):  
M. Santibánez ◽  
K. Rohde
Keyword(s):  
Protein Sequences ◽  
Multiple Alignment ◽  
Alignment Program

A multiple alignment of the capsid protein sequences of nepoviruses and comoviruses suggests a common structure

1995 ◽  
Vol 140 (11) ◽  
pp. 2041-2053 ◽  
Author(s):  
O. Le Gall ◽  
T. Candresse ◽  
J. Dunez
Keyword(s):  
Capsid Protein ◽  
Protein Sequences ◽  
Multiple Alignment ◽  
Common Structure

MALAKITE: AN AUTOMATIC TOOL FOR CHARACTERISATION OF STRUCTURE OF RELIABLE BLOCKS IN MULTIPLE ALIGNMENTS OF PROTEIN SEQUENCES

2010 ◽  
Vol 08 (03) ◽  
pp. 503-517 ◽  
Author(s):  
BORIS BURKOV ◽  
BORIS NAGAEV ◽  
SERGEI SPIRIN ◽  
ANDREI ALEXEEVSKI
Keyword(s):  
Protein Sequences ◽  
Structural Data ◽  
Multiple Alignment ◽  
Multiple Alignments ◽  
Simple Consideration ◽  
Automatic Tool ◽  
Alignment Analysis

It makes sense to speak of alignment of protein sequences only within the regions, where the sequences are related to each other. This simple consideration is often disregarded by programs of multiple alignment construction. A package for alignment analysis MAlAKiTE (Multiple Alignment Automatic Kinship Tiling Engine) is introduced. It aims to find the blocks of reliable alignment, which contain related regions only, within the whole alignment and allows for dealing with them. The validity of the detection of reliable blocks' was verified by comparison with structural data.

scholarly journals Multiple alignment of protein sequences with repeats and rearrangements

2006 ◽  
Vol 34 (20) ◽  
pp. 5932-5942 ◽  
Author(s):  
Tu Minh Phuong ◽  
Chuong B. Do ◽  
Robert C. Edgar ◽  
Serafim Batzoglou
Keyword(s):  
Protein Sequences ◽  
Multiple Alignment

Positive and negative regulatory elements of the rabbit embryonic ϵ-globin gene revealed by an improved multiple alignment program and functional analysis

DNA Sequence ◽  
1993 ◽  
Vol 4 (3) ◽  
pp. 163-176 ◽  
Author(s):  
Ross Hardison ◽  
Kun-Mao Chao ◽  
Michael Adamkiewicz ◽  
Doug Price ◽  
John Jackson ◽  
...  
Keyword(s):  
Functional Analysis ◽  
Globin Gene ◽  
Regulatory Elements ◽  
Multiple Alignment ◽  
Alignment Program
Sign in / Sign up

Export Citation Format

Share Document