scholarly journals Multiple alignment of protein sequences with repeats and rearrangements

2006 ◽  
Vol 34 (20) ◽  
pp. 5932-5942 ◽  
Author(s):  
Tu Minh Phuong ◽  
Chuong B. Do ◽  
Robert C. Edgar ◽  
Serafim Batzoglou
Keyword(s):  
Protein Sequences ◽  
Multiple Alignment

A multiple alignment of the capsid protein sequences of nepoviruses and comoviruses suggests a common structure

1995 ◽  
Vol 140 (11) ◽  
pp. 2041-2053 ◽  
Author(s):  
O. Le Gall ◽  
T. Candresse ◽  
J. Dunez
Keyword(s):  
Capsid Protein ◽  
Protein Sequences ◽  
Multiple Alignment ◽  
Common Structure

MALAKITE: AN AUTOMATIC TOOL FOR CHARACTERISATION OF STRUCTURE OF RELIABLE BLOCKS IN MULTIPLE ALIGNMENTS OF PROTEIN SEQUENCES

2010 ◽  
Vol 08 (03) ◽  
pp. 503-517 ◽  
Author(s):  
BORIS BURKOV ◽  
BORIS NAGAEV ◽  
SERGEI SPIRIN ◽  
ANDREI ALEXEEVSKI
Keyword(s):  
Protein Sequences ◽  
Structural Data ◽  
Multiple Alignment ◽  
Multiple Alignments ◽  
Simple Consideration ◽  
Automatic Tool ◽  
Alignment Analysis

It makes sense to speak of alignment of protein sequences only within the regions, where the sequences are related to each other. This simple consideration is often disregarded by programs of multiple alignment construction. A package for alignment analysis MAlAKiTE (Multiple Alignment Automatic Kinship Tiling Engine) is introduced. It aims to find the blocks of reliable alignment, which contain related regions only, within the whole alignment and allows for dealing with them. The validity of the detection of reliable blocks' was verified by comparison with structural data.

A multiple alignment program for protein sequences

1987 ◽  
Vol 3 (2) ◽  
pp. 111-114 ◽  
Author(s):  
M. Santibánez ◽  
K. Rohde
Keyword(s):  
Protein Sequences ◽  
Multiple Alignment ◽  
Alignment Program

A strategy for the rapid multiple alignment of protein sequences

1987 ◽  
Vol 198 (2) ◽  
pp. 327-337 ◽  
Author(s):  
Geoffrey J. Barton ◽  
Michael J.E. Sternberg
Keyword(s):  
Protein Sequences ◽  
Multiple Alignment

scholarly journals 3P270 Multiple alignment of transmembrane protein sequences and length-variable loops

2004 ◽  
Vol 44 (supplement) ◽  
pp. S257
Author(s):  
T. Ohta ◽  
T. Kimura ◽  
T. Nishio ◽  
T. Shimizu
Keyword(s):  
Transmembrane Protein ◽  
Protein Sequences ◽  
Multiple Alignment ◽  
Variable Loops ◽  
Length Variable
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