scholarly journals An integrated tool for microarray data clustering and cluster validity assessment

2004 ◽  
Vol 21 (4) ◽  
pp. 451-455 ◽  
Author(s):  
N. Bolshakova ◽  
F. Azuaje ◽  
P d. Cunningham
Keyword(s):  
Microarray Data ◽  
Data Clustering ◽  
Cluster Validity ◽  
Validity Assessment

Assessment of Twitter Data Clusters with Cosine-Based Validation Metrics Using Hybrid Topic Models

2020 ◽  
Vol 25 (6) ◽  
pp. 755-769
Author(s):  
Noorullah R. Mohammed ◽  
Moulana Mohammed
Keyword(s):  
Data Clustering ◽  
Topic Models ◽  
Cluster Validity ◽  
Text Documents ◽  
Text Data ◽  
Validity Assessment ◽  
Text Document ◽  
Cluster Validity Indices ◽  
Validity Indices ◽  
Data Clusters

Text data clustering is performed for organizing the set of text documents into the desired number of coherent and meaningful sub-clusters. Modeling the text documents in terms of topics derivations is a vital task in text data clustering. Each tweet is considered as a text document, and various topic models perform modeling of tweets. In existing topic models, the clustering tendency of tweets is assessed initially based on Euclidean dissimilarity features. Cosine metric is more suitable for more informative assessment, especially of text clustering. Thus, this paper develops a novel cosine based external and interval validity assessment of cluster tendency for improving the computational efficiency of tweets data clustering. In the experimental, tweets data clustering results are evaluated using cluster validity indices measures. Experimentally proved that cosine based internal and external validity metrics outperforms the other using benchmarked and Twitter-based datasets.

scholarly journals Canonical PSO Based K-Means Clustering Approach for Real Datasets

2014 ◽  
Vol 2014 ◽  
pp. 1-11 ◽  
Author(s):  
Lopamudra Dey ◽  
Sanjay Chakraborty
Keyword(s):  
Data Mining ◽  
Air Pollution ◽  
Clustering Algorithm ◽  
Clustering Algorithms ◽  
Real Life ◽  
Cluster Validity ◽  
Validity Assessment ◽  
Different Types ◽  
Clustering Approach ◽  
Validity Measure

“Clustering” the significance and application of this technique is spread over various fields. Clustering is an unsupervised process in data mining, that is why the proper evaluation of the results and measuring the compactness and separability of the clusters are important issues. The procedure of evaluating the results of a clustering algorithm is known as cluster validity measure. Different types of indexes are used to solve different types of problems and indices selection depends on the kind of available data. This paper first proposes Canonical PSO based K-means clustering algorithm and also analyses some important clustering indices (intercluster, intracluster) and then evaluates the effects of those indices on real-time air pollution database, wholesale customer, wine, and vehicle datasets using typical K-means, Canonical PSO based K-means, simple PSO based K-means, DBSCAN, and Hierarchical clustering algorithms. This paper also describes the nature of the clusters and finally compares the performances of these clustering algorithms according to the validity assessment. It also defines which algorithm will be more desirable among all these algorithms to make proper compact clusters on this particular real life datasets. It actually deals with the behaviour of these clustering algorithms with respect to validation indexes and represents their results of evaluation in terms of mathematical and graphical forms.

Marked Point Processes for Microarray Data Clustering

2017 ◽  
pp. 133-147 ◽  
Author(s):  
Khadidja Henni ◽  
Olivier Alata ◽  
Abdellatif El Idrissi ◽  
Brigitte Vannier ◽  
Lynda Zaoui ◽  
...  
Keyword(s):  
Microarray Data ◽  
Data Clustering ◽  
Point Processes ◽  
Marked Point ◽  
Marked Point Processes

CLUSTERING GENE EXPRESSION DATA WITH KERNEL PRINCIPAL COMPONENTS

2005 ◽  
Vol 03 (02) ◽  
pp. 303-316 ◽  
Author(s):  
ZHENQIU LIU ◽  
DECHANG CHEN ◽  
HALIMA BENSMAIL ◽  
YING XU
Keyword(s):  
Gene Expression ◽  
Principal Component Analysis ◽  
Gene Expression Data ◽  
Microarray Data ◽  
Principal Components ◽  
Data Clustering ◽  
Principal Component ◽  
Kernel Principal Component Analysis ◽  
Expression Data ◽  
Fuzzy C Means

Kernel principal component analysis (KPCA) has been applied to data clustering and graphic cut in the last couple of years. This paper discusses the application of KPCA to microarray data clustering. A new algorithm based on KPCA and fuzzy C-means is proposed. Experiments with microarray data show that the proposed algorithms is in general superior to traditional algorithms.

New indices for cluster validity assessment

2005 ◽  
Vol 26 (15) ◽  
pp. 2353-2363 ◽  
Author(s):  
Minho Kim ◽  
R.S. Ramakrishna
Keyword(s):  
Cluster Validity ◽  
Validity Assessment
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