scholarly journals ProBiS algorithm for detection of structurally similar protein binding sites by local structural alignment

2010 ◽  
Vol 26 (9) ◽  
pp. 1160-1168 ◽  
Author(s):  
Janez Konc ◽  
Dušanka Janežič
Keyword(s):  
Protein Binding ◽  
Binding Sites ◽  
Structural Alignment ◽  
Protein Binding Sites ◽  
Similar Protein

scholarly journals PBSword: a web server for searching similar protein-protein binding sites

2012 ◽  
Vol 40 (W1) ◽  
pp. W428-W434 ◽  
Author(s):  
B. Pang ◽  
X. Kuang ◽  
N. Zhao ◽  
D. Korkin ◽  
C.-R. Shyu
Keyword(s):  
Protein Binding ◽  
Binding Sites ◽  
Web Server ◽  
Protein Binding Sites ◽  
Similar Protein

EVALUATION OF TISSUE STEROID BINDING IN VITRO

1971 ◽  
Vol 68 (1_Suppl) ◽  
pp. S223-S246 ◽  
Author(s):  
C. R. Wira ◽  
H. Rochefort ◽  
E. E. Baulieu
Keyword(s):  
Protein Binding ◽  
Binding Sites ◽  
Experimental System ◽  
Specific Protein ◽  
Coupling Mechanism ◽  
Target Tissue ◽  
Protein Binding Sites ◽  
Definition Of ◽  
Hormone Specificity

ABSTRACT The definition of a RECEPTOR* in terms of a receptive site, an executive site and a coupling mechanism, is followed by a general consideration of four binding criteria, which include hormone specificity, tissue specificity, high affinity and saturation, essential for distinguishing between specific and nonspecific binding. Experimental approaches are proposed for choosing an experimental system (either organized or soluble) and detecting the presence of protein binding sites. Techniques are then presented for evaluating the specific protein binding sites (receptors) in terms of the four criteria. This is followed by a brief consideration of how receptors may be located in cells and characterized when extracted. Finally various examples of oestrogen, androgen, progestagen, glucocorticoid and mineralocorticoid binding to their respective target tissues are presented, to illustrate how researchers have identified specific corticoid and mineralocorticoid binding in their respective target tissue receptors.

scholarly journals Transcription signals and protein binding sites for sericin gene transcription in vitro

1989 ◽  
Vol 264 (31) ◽  
pp. 18707-18713 ◽  
Author(s):  
K Matsuno ◽  
C C Hui ◽  
S Takiya ◽  
T Suzuki ◽  
K Ueno ◽  
...  
Keyword(s):  
Protein Binding ◽  
Gene Transcription ◽  
Binding Sites ◽  
Protein Binding Sites ◽  
Transcription In Vitro ◽  
Transcription Signals

scholarly journals Structure of the canine pancreatic colipase gene includes two protein-binding sites in the promoter region

1993 ◽  
Vol 268 (15) ◽  
pp. 11312-11320
Author(s):  
S. Fukuoka ◽  
D.E. Zhang ◽  
Y. Taniguchi ◽  
G.A. Scheele
Keyword(s):  
Protein Binding ◽  
Binding Sites ◽  
Promoter Region ◽  
Protein Binding Sites
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